6PR5A

Cryo-em structure of hztransib strand transfer complex (stc)
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
480
structure length
480
Chain Sequence
STIFSPEKALGLLLSLKLSKWQYITLRETTIREGSKEIYPSYYKVQKAKLQCYPPKAFVAVTDSSAKIALQALLDLTVNRIFETIRSPDAIQNKQLILISKWGFDGASNQSRYKQNIESGQGDSSIFMTSLVPLKLTADGDTVWVNPKPCSPMYCRPVQFSFVKETKDVVINEKTAMDDEIEALVPSKCQGHEISHKLMMTMIDGKICTYLSEAKSNAACYLCLAKPTEMSKLDVIASKTISSGVYEFGLSTLHARINVMECLLHIAYRLDFKKWSARGEGHQELLHSRKKLIQDRFKDDLNLLIDIVKQGSGTTNDGNTARRFFEFPDKTAAITGLDEDLIRRFSVILQAITSGEIIDVPKFKEYARTTAEKYVELYDWYYMSSTVHKLLIHGGDIIAENAIVPIGSLSEEASEARNKDFRRFREHHSRKKSRQASNEDILNMLIISSDPLISFTRPKLDAHKRQTYFKETVELLQLQD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of a RAG-like transposase during cut-and-paste transposition
rcsb
molecule keywords DNA-mediated transposase
molecule tags Recombination/dna
source organism Helicoverpa zea
total genus 123
structure length 480
sequence length 480
chains with identical sequence E
ec nomenclature
pdb deposition date 2019-07-10
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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