6PRNA

E1m, k50a, r52a mutant of rh. blastica porin
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords PORIN
publication title Porin mutants with new channel properties.
pubmed rcsb
source organism Rhodobacter blasticus
total genus 76
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 6prnA00
5JDPA 4FSOA 2PRNA 5DL5A 4LSHA 4KR4A 4D5UA 4LSFA 4KR8A 2J1NA 3SYSA 2QTKA 1HXUA 4LSEA 3FYXA 2Y0KA 4GCPA 3POUA 3O0EA 3POXA 2K4TA 1GFMA 5DL7A 4FRTA 3PRNA 3EMNX 2FGRA 2Y0HA 5DL8A 1HXXA 1GFNA 1GFOA 2Y2XA 2J4UP 4FMSA 3VY9X 4C69X 3VZWX 1GFPA 4RJWA 3WI4A 3SYBA 2Y0LA 4FOZA 5FVNA 3VZUX 4D64A 2PORA 1PHOA 1BH3A 1OSMA 4FSPA 4GCSA 1E54A 6PRNA 3SZVA 7PRNA 8PRNA 3VZTX 3SY7A 4D65A 3POQA 1PRNA 1MPFA 3T24A 1BT9A 2ZLDA 2OMFA 5DL6A 1OPFA 3HWBA 2ODJA 3A2SX 2XE3A 3T20A 3SY9A 1GFQA 2O4VA 4LSIA 2ZFGA 3UU2A 4FT6A 2XE1A 4RJXA 4GCQA 3JTYA 3HW9A 4AUIA 2XG6A 3K19A 1HXTA 2XE2A 3WI5A 3VY8X 3T0SA 3SZDA 5PRNA 4BUMX 4JFBA 1H6S1 3UPGA 3NSGA 2XE5A 4KRAA 3PORA 2FGQX 4FRXA
chains in the Genus database with same CATH superfamily
4RL9A 3VE2A 4D5UA 4FSOA 5JDPA 1MM4A 2JMMA 2M07A 2PRNA 4LSHA 2M06A 4KR4A 2YNKA 3BS0A 2R4OA 4N74A 5G39A 3V8UA 4FQEA 4LSFA 2KZ7B 4AFKA 1QJ9A 3BRYA 4RLBA 4KR8A 2J1NA 3SYSA 2QTKA 1HXUA 2R89A 3PGRA 4AYDC 2X9KA 1Q9GA 4LSEA 1T1LA 3FYXA 3A0BO 3AAAB 4UB6O 4B61A 2Y0KA 4GCPA 4K3BA 1IZNB 2K0LA 3LK2B 2AXTO 3O0EA 3POXA 3POUA 4O4XA 1MM5A 4AYNA 2K4TA 3QRAA 4GF4A 1GFMA 5DL7A 4G75A 2KDYA 3G7GA 4AZLA 2JQYA 3LK42 4FRTA 3PRNA 3EMNX 2R4LA 4O4UA 2FGRA 4Z3TA 1Q9FA 2Y0HA 5DL8A 1HXXA 1GFNA 1BXWA 2YPVA 1GFOA 2F1TA 2WJRA 2Y2XA 2J4UP 4FMSA 4C00A 3VY9X 3RBHA 3AAAA 4C69X 5AFUK 1G90A 3VZWX 1IZNA 1GFPA 3LK2A 4RJWA 2KC0A 3SYBA 4O3YA 3WI4A 2Y0LA 2IWVA 3PGUA 3PF1A 4XNKA 2LFUA 4N58A 4FOZA 4O3XB 5FVNA 3VZUX 1ZHYA 2ERVA 3BRZA 4D64A 2R4NA 2MNHA 2PORA 3JCUO 4FZNA 1PHOA 3NJTA 3AA0A 2W80C 4F4BA 1BH3A 4N75A 5IYUA 4IL6O 1OSMA 3AA6B 5EE2A 3KVDD 4FSPA 1E54A 4GCSA 6PRNA 5H2FO 3SZVA 3AA1B 7PRNA 2LHFA 5ADXL 2IWWA 2KZ7A 3DWNA 3PGSA 8PRNA 2KXPB 1ZHWA 5KAIO 3SY7A 3VZTX 4D65A 3DWOX 4JCHA 4C4VB 3POQA 1PRNA 1MPFA 3AA7B 3HOLA 4O3WA 3VE1A 3T24A 1BT9A 2R88A 3LK3B 2ZLDA 3AAEB 2OMFA 3AA6A 4FESA 5DL6A 1OPFA 3HWBA 2ODJA 3AA1A 5KAFO 3PQSA 3A2SX 2XE3A 2W81C 3DZMA 2WVPA 3GP6A 2F1CX 4FZMA 5T5FA 3SY9A 5B66O 1GFQA 2O4VA 3QRCA 4LSIA 3T20A 2ZFGA 1ZHXA 3AA7A 1T16A 2WJQA 2XTRA 2Y7SA 3KZIO 5G26A 3UU2A 1QJ8A 3LK3A 3LK41 4PR7A 4GHBA 4FZLA 2R4PA 4AKRB 1THQA 4FT6A 5G38A 2F1VA 3UAQA 2XE1A 5G3AA 5B5EO 2X27X 5DL5A 4RJXA 4O3ZA 4GCQA 3JTYA 1ORMA 1ZHTA 3DA4A 3HW9A 4E1TA 2XTQA 5GTIO 2MHLA 2XG6A 3K19A 4AKMA 4AUIA 1HXTA 2XE2A 3TZGA 3WI5A 4PJ0O 4PUXA 5AFUL 2N2MA 3VY8X 4AYID 3T0SA 4N59A 3PQUA 3C5OA 4AKRA 4K3CA 3A0HO 5TISO 3SZDA 3DA3A 4QQ1A 3HOEA 1YS5A 2KXPA 5PRNA 4BUMX 4JFBA 1P4TA 1H6S1 5ADXK 4AYMC 2R8AA 4C4VA 4UB8O 2GE4A 5D5DA 4E1SA 3UPGA 3NSGA 5E79O 2XE5A 4G76A 4U9CA 4O49A 3AAEA 5GV0A 4FUVA 2N2LA 3AA0B 2XMXA 4KRAA 1QJPA 3WU2O 3PORA 4AYEC 5GTHO 1S5LO 4CTDA 1ZHZA 4RLCA 4XNLA 2FGQX 4FRXA
chains in the Genus database with same CATH topology
4RL9A 3VE2A 5JDPA 4FSOA 1MM4A 2JMMA 2M07A 2PRNA 4LSHA 2M06A 4KR4A 2YNKA 5DL5A 4D5UA 3V8UA 4AFKA 4LSFA 2KZ7B 1QJ9A 4RLBA 4KR8A 2J1NA 3SYSA 2QTKA 1HXUA 4AYDC 1Q9GA 4LSEA 3FYXA 3AAAB 4B61A 2Y0KA 4GCPA 1IZNB 2K0LA 3LK2B 3O0EA 3POXA 3POUA 4O4XA 4AYNA 1MM5A 2K4TA 3QRAA 4GF4A 1GFMA 5DL7A 4G75A 2KDYA 3G7GA 4AZLA 3LK42 4FRTA 3PRNA 3EMNX 4O4UA 2FGRA 1Q9FA 2Y0HA 5DL8A 1HXXA 1GFNA 1BXWA 2YPVA 1GFOA 2F1TA 2Y2XA 2J4UP 4FMSA 3VY9X 3RBHA 3AAAA 4C69X 5AFUK 1G90A 3VZWX 1IZNA 1GFPA 3LK2A 4RJWA 2KC0A 3SYBA 4O3YA 3WI4A 2Y0LA 4XNKA 2LFUA 4N58A 4FOZA 4O3XB 5FVNA 3VZUX 1ZHYA 2ERVA 4D64A 2MNHA 2PORA 4FZNA 4F4BA 1PHOA 5IYUA 3AA0A 2W80C 1BH3A 1OSMA 3AA6B 5EE2A 3KVDD 4FSPA 1E54A 4GCSA 6PRNA 3SZVA 3AA1B 7PRNA 2LHFA 5ADXL 2KZ7A 8PRNA 2KXPB 1ZHWA 3VZTX 3SY7A 4D65A 4JCHA 3POQA 1PRNA 1MPFA 3AA7B 3HOLA 4O3WA 3VE1A 3T24A 1BT9A 3LK3B 2ZLDA 3AAEB 2OMFA 3AA6A 4FESA 5DL6A 1OPFA 3HWBA 2ODJA 3AA1A 3PQSA 3A2SX 2XE3A 2W81C 4FZMA 3GP6A 5T5FA 3T20A 3SY9A 1GFQA 2O4VA 3QRCA 4LSIA 2ZFGA 1ZHXA 3AA7A 2XTRA 3UU2A 2Y7SA 4Z3TA 5G26A 1QJ8A 3LK3A 3LK41 4GHBA 4FZLA 4AKRB 1THQA 4FT6A 2F1VA 3UAQA 2XE1A 2X27X 4RJXA 4O3ZA 4GCQA 3JTYA 1ORMA 1ZHTA 3DA4A 3HW9A 4E1TA 2XTQA 4AKMA 2MHLA 2XG6A 3K19A 4AUIA 1HXTA 2XE2A 3TZGA 3WI5A 4PUXA 5AFUL 2N2MA 3VY8X 4AYID 3T0SA 4N59A 3PQUA 3C5OA 4AKRA 3SZDA 3DA3A 4QQ1A 3HOEA 1YS5A 2KXPA 5PRNA 4BUMX 4JFBA 1P4TA 1H6S1 5ADXK 4AYMC 4E1SA 2GE4A 5D5DA 3UPGA 3NSGA 2XE5A 4G76A 4U9CA 4O49A 3AAEA 5GV0A 4FUVA 2N2LA 3AA0B 2XMXA 4KRAA 1QJPA 3PORA 4AYEC 1ZHZA 4RLCA 4XNLA 2FGQX 4FRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JDP A;  4FSO A;  2PRN A;  5DL5 A;  4LSH A;  4KR4 A;  4D5U A;  4LSF A;  4KR8 A;  2J1N A;  3SYS A;  2QTK A;  1HXU A;  4LSE A;  3FYX A;  2Y0K A;  4GCP A;  3POU A;  3O0E A;  3POX A;  2K4T A;  1GFM A;  5DL7 A;  4FRT A;  3PRN A;  3EMN X;  2FGR A;  2Y0H A;  5DL8 A;  1HXX A;  1GFN A;  1GFO A;  2Y2X A;  2J4U P;  4FMS A;  3VY9 X;  4C69 X;  3VZW X;  1GFP A;  4RJW A;  3WI4 A;  3SYB A;  2Y0L A;  4FOZ A;  5FVN A;  3VZU X;  4D64 A;  2POR A;  1PHO A;  1BH3 A;  1OSM A;  4FSP A;  4GCS A;  1E54 A;  6PRN A;  3SZV A;  7PRN A;  8PRN A;  3VZT X;  3SY7 A;  4D65 A;  3POQ A;  1PRN A;  1MPF A;  3T24 A;  1BT9 A;  2ZLD A;  2OMF A;  5DL6 A;  1OPF A;  3HWB A;  2ODJ A;  3A2S X;  2XE3 A;  3T20 A;  3SY9 A;  1GFQ A;  2O4V A;  4LSI A;  2ZFG A;  3UU2 A;  4FT6 A;  2XE1 A;  4RJX A;  4GCQ A;  3JTY A;  3HW9 A;  4AUI A;  2XG6 A;  3K19 A;  1HXT A;  2XE2 A;  3WI5 A;  3VY8 X;  3T0S A;  3SZD A;  5PRN A;  4BUM X;  4JFB A;  1H6S 1;  3UPG A;  3NSG A;  2XE5 A;  4KRA A;  3POR A;  2FGQ X;  4FRX A; 
#chains in the Genus database with same CATH topology
 4RL9 A;  3VE2 A;  4D5U A;  4FSO A;  5JDP A;  1MM4 A;  2JMM A;  2M07 A;  2PRN A;  4LSH A;  2M06 A;  4KR4 A;  2YNK A;  3BS0 A;  2R4O A;  4N74 A;  5G39 A;  3V8U A;  4FQE A;  4LSF A;  2KZ7 B;  4AFK A;  1QJ9 A;  3BRY A;  4RLB A;  4KR8 A;  2J1N A;  3SYS A;  2QTK A;  1HXU A;  2R89 A;  3PGR A;  4AYD C;  2X9K A;  1Q9G A;  4LSE A;  1T1L A;  3FYX A;  3A0B O;  3AAA B;  4UB6 O;  4B61 A;  2Y0K A;  4GCP A;  4K3B A;  1IZN B;  2K0L A;  3LK2 B;  2AXT O;  3O0E A;  3POX A;  3POU A;  4O4X A;  1MM5 A;  4AYN A;  2K4T A;  3QRA A;  4GF4 A;  1GFM A;  5DL7 A;  4G75 A;  2KDY A;  3G7G A;  4AZL A;  2JQY A;  3LK4 2;  4FRT A;  3PRN A;  3EMN X;  2R4L A;  4O4U A;  2FGR A;  4Z3T A;  1Q9F A;  2Y0H A;  5DL8 A;  1HXX A;  1GFN A;  1BXW A;  2YPV A;  1GFO A;  2F1T A;  2WJR A;  2Y2X A;  2J4U P;  4FMS A;  4C00 A;  3VY9 X;  3RBH A;  3AAA A;  4C69 X;  5AFU K;  1G90 A;  3VZW X;  1IZN A;  1GFP A;  3LK2 A;  4RJW A;  2KC0 A;  3SYB A;  4O3Y A;  3WI4 A;  2Y0L A;  2IWV A;  3PGU A;  3PF1 A;  4XNK A;  2LFU A;  4N58 A;  4FOZ A;  4O3X B;  5FVN A;  3VZU X;  1ZHY A;  2ERV A;  3BRZ A;  4D64 A;  2R4N A;  2MNH A;  2POR A;  3JCU O;  4FZN A;  1PHO A;  3NJT A;  3AA0 A;  2W80 C;  4F4B A;  1BH3 A;  4N75 A;  5IYU A;  4IL6 O;  1OSM A;  3AA6 B;  5EE2 A;  3KVD D;  4FSP A;  1E54 A;  4GCS A;  6PRN A;  5H2F O;  3SZV A;  3AA1 B;  7PRN A;  2LHF A;  5ADX L;  2IWW A;  2KZ7 A;  3DWN A;  3PGS A;  8PRN A;  2KXP B;  1ZHW A;  5KAI O;  3SY7 A;  3VZT X;  4D65 A;  3DWO X;  4JCH A;  4C4V B;  3POQ A;  1PRN A;  1MPF A;  3AA7 B;  3HOL A;  4O3W A;  3VE1 A;  3T24 A;  1BT9 A;  2R88 A;  3LK3 B;  2ZLD A;  3AAE B;  2OMF A;  3AA6 A;  4FES A;  5DL6 A;  1OPF A;  3HWB A;  2ODJ A;  3AA1 A;  5KAF O;  3PQS A;  3A2S X;  2XE3 A;  2W81 C;  3DZM A;  2WVP A;  3GP6 A;  2F1C X;  4FZM A;  5T5F A;  3SY9 A;  5B66 O;  1GFQ A;  2O4V A;  3QRC A;  4LSI A;  3T20 A;  2ZFG A;  1ZHX A;  3AA7 A;  1T16 A;  2WJQ A;  2XTR A;  2Y7S A;  3KZI O;  5G26 A;  3UU2 A;  1QJ8 A;  3LK3 A;  3LK4 1;  4PR7 A;  4GHB A;  4FZL A;  2R4P A;  4AKR B;  1THQ A;  4FT6 A;  5G38 A;  2F1V A;  3UAQ A;  2XE1 A;  5G3A A;  5B5E O;  2X27 X;  5DL5 A;  4RJX A;  4O3Z A;  4GCQ A;  3JTY A;  1ORM A;  1ZHT A;  3DA4 A;  3HW9 A;  4E1T A;  2XTQ A;  5GTI O;  2MHL A;  2XG6 A;  3K19 A;  4AKM A;  4AUI A;  1HXT A;  2XE2 A;  3TZG A;  3WI5 A;  4PJ0 O;  4PUX A;  5AFU L;  2N2M A;  3VY8 X;  4AYI D;  3T0S A;  4N59 A;  3PQU A;  3C5O A;  4AKR A;  4K3C A;  3A0H O;  5TIS O;  3SZD A;  3DA3 A;  4QQ1 A;  3HOE A;  1YS5 A;  2KXP A;  5PRN A;  4BUM X;  4JFB A;  1P4T A;  1H6S 1;  5ADX K;  4AYM C;  2R8A A;  4C4V A;  4UB8 O;  2GE4 A;  5D5D A;  4E1S A;  3UPG A;  3NSG A;  5E79 O;  2XE5 A;  4G76 A;  4U9C A;  4O49 A;  3AAE A;  5GV0 A;  4FUV A;  2N2L A;  3AA0 B;  2XMX A;  4KRA A;  1QJP A;  3WU2 O;  3POR A;  4AYE C;  5GTH O;  1S5L O;  4CTD A;  1ZHZ A;  4RLC A;  4XNL A;  2FGQ X;  4FRX A; 
#chains in the Genus database with same CATH homology
 4RL9 A;  3VE2 A;  5JDP A;  4FSO A;  1MM4 A;  2JMM A;  2M07 A;  2PRN A;  4LSH A;  2M06 A;  4KR4 A;  2YNK A;  5DL5 A;  4D5U A;  3V8U A;  4AFK A;  4LSF A;  2KZ7 B;  1QJ9 A;  4RLB A;  4KR8 A;  2J1N A;  3SYS A;  2QTK A;  1HXU A;  4AYD C;  1Q9G A;  4LSE A;  3FYX A;  3AAA B;  4B61 A;  2Y0K A;  4GCP A;  1IZN B;  2K0L A;  3LK2 B;  3O0E A;  3POX A;  3POU A;  4O4X A;  4AYN A;  1MM5 A;  2K4T A;  3QRA A;  4GF4 A;  1GFM A;  5DL7 A;  4G75 A;  2KDY A;  3G7G A;  4AZL A;  3LK4 2;  4FRT A;  3PRN A;  3EMN X;  4O4U A;  2FGR A;  1Q9F A;  2Y0H A;  5DL8 A;  1HXX A;  1GFN A;  1BXW A;  2YPV A;  1GFO A;  2F1T A;  2Y2X A;  2J4U P;  4FMS A;  3VY9 X;  3RBH A;  3AAA A;  4C69 X;  5AFU K;  1G90 A;  3VZW X;  1IZN A;  1GFP A;  3LK2 A;  4RJW A;  2KC0 A;  3SYB A;  4O3Y A;  3WI4 A;  2Y0L A;  4XNK A;  2LFU A;  4N58 A;  4FOZ A;  4O3X B;  5FVN A;  3VZU X;  1ZHY A;  2ERV A;  4D64 A;  2MNH A;  2POR A;  4FZN A;  4F4B A;  1PHO A;  5IYU A;  3AA0 A;  2W80 C;  1BH3 A;  1OSM A;  3AA6 B;  5EE2 A;  3KVD D;  4FSP A;  1E54 A;  4GCS A;  6PRN A;  3SZV A;  3AA1 B;  7PRN A;  2LHF A;  5ADX L;  2KZ7 A;  8PRN A;  2KXP B;  1ZHW A;  3VZT X;  3SY7 A;  4D65 A;  4JCH A;  3POQ A;  1PRN A;  1MPF A;  3AA7 B;  3HOL A;  4O3W A;  3VE1 A;  3T24 A;  1BT9 A;  3LK3 B;  2ZLD A;  3AAE B;  2OMF A;  3AA6 A;  4FES A;  5DL6 A;  1OPF A;  3HWB A;  2ODJ A;  3AA1 A;  3PQS A;  3A2S X;  2XE3 A;  2W81 C;  4FZM A;  3GP6 A;  5T5F A;  3T20 A;  3SY9 A;  1GFQ A;  2O4V A;  3QRC A;  4LSI A;  2ZFG A;  1ZHX A;  3AA7 A;  2XTR A;  3UU2 A;  2Y7S A;  4Z3T A;  5G26 A;  1QJ8 A;  3LK3 A;  3LK4 1;  4GHB A;  4FZL A;  4AKR B;  1THQ A;  4FT6 A;  2F1V A;  3UAQ A;  2XE1 A;  2X27 X;  4RJX A;  4O3Z A;  4GCQ A;  3JTY A;  1ORM A;  1ZHT A;  3DA4 A;  3HW9 A;  4E1T A;  2XTQ A;  4AKM A;  2MHL A;  2XG6 A;  3K19 A;  4AUI A;  1HXT A;  2XE2 A;  3TZG A;  3WI5 A;  4PUX A;  5AFU L;  2N2M A;  3VY8 X;  4AYI D;  3T0S A;  4N59 A;  3PQU A;  3C5O A;  4AKR A;  3SZD A;  3DA3 A;  4QQ1 A;  3HOE A;  1YS5 A;  2KXP A;  5PRN A;  4BUM X;  4JFB A;  1P4T A;  1H6S 1;  5ADX K;  4AYM C;  4E1S A;  2GE4 A;  5D5D A;  3UPG A;  3NSG A;  2XE5 A;  4G76 A;  4U9C A;  4O49 A;  3AAE A;  5GV0 A;  4FUV A;  2N2L A;  3AA0 B;  2XMX A;  4KRA A;  1QJP A;  3POR A;  4AYE C;  1ZHZ A;  4RLC A;  4XNL A;  2FGQ X;  4FRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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