6Q8YAB

Cryo-em structure of the mrna translating and degrading yeast 80s ribosome-xrn1 nuclease complex
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
136
structure length
136
Chain Sequence
SGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords 18S ribosomal RNA
publication title Structure of the 80S ribosome-Xrn1 nuclease complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 23
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2018-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
AB PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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