6QUHA

Ghk tagged gfp variant crystal form ii at 1.34a wavelength
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
229
structure length
228
Chain Sequence
GHKRGEQLFTGVVPILVELDGDVNGHRFSVRGEGEGDATNGRLTLRFICTTGRLPVPWPTLVTTLVQCFSRYPDHMRRHDFFKSAMPEGYVQERTISFRDDGTYRTRAVVRFEGNTLVNRIELRGTNFREDGNILGHRLEYNYNSHNVYITADRQRNGIRANFTIRHNVEDGSVQLANHYQQNTPIGNGPVLLPDDHYLSTQTALSRDPNERRDHMVLLEFVTAAGIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Fluorescent protein
molecule keywords Green fluorescent protein
publication title Using the copper binding peptide GHK for phasing structures
rcsb
source organism Aequorea victoria
total genus 60
structure length 228
sequence length 229
chains with identical sequence C
ec nomenclature
pdb deposition date 2019-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01353 GFP Green fluorescent protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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