6R1RA

Ribonucleotide reductase e441d mutant r1 protein from escherichia coli
Total Genus 277
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
277
sequence length
738
structure length
738
Chain Sequence
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Complex (oxidoreductase/peptide)
molecule keywords RIBONUCLEOTIDE REDUCTASE R1 PROTEIN
publication title A new mechanism-based radical intermediate in a mutant R1 protein affecting the catalytically essential Glu441 in Escherichia coli ribonucleotide reductase.
pubmed doi rcsb
source organism Escherichia coli
total genus 277
structure length 738
sequence length 738
chains with identical sequence B, C
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 1997-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
A PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
A PF03477 ATP-cone ATP cone domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 6r1rA02
2F3OA 1L1LA 2CVUA 2CVYA 4ERMA 2Y8NA 2CVTA 3S87A 1H7BA 3PFLA 1PEQA 3K8TA 2XAVA 2WGHA 2PFLA 3HNEA 2YAJA 2HA9A 3TBAA 5CNUA 2CVVA 2ZLGA 1XJMA 3HNFA 1H78A 1CM5A 3O0QA 1PEMA 2XO5A 1XJGA 4MTJA 2EUDA 3S8CA 3R1RA 1R9DA 1R1RA 3O0OA 2CVXA 1XJJA 2XAWA 2CVSA 3TB9A 1XJFA 1ZYZA 1PEOA 1H7AA 1H79A 3S8BA 3HNCA 5CNSA 2BQ1E 4X3VA 2R1RA 1RLRA 3HNDA 2XAXA 2XAKA 1XJEA 2XAPA 5R1RA 1QHMA 3O0NA 1HK8A 7R1RA 1R8WA 6R1RA 1PEUA 2ZLFA 2X0XA 2XAZA 3RSRA 3S8AA 1MZOA 1XJKA 2XO4A 1XJNA 1H16A 1H18A 1H17A 4R1RA 2CVWA 5CNTA 5CNVA 2XAYA 1ZZDA
chains in the Genus database with same CATH superfamily
2F3OA 1L1LA 2CVUA 2CVYA 4ERMA 2Y8NA 2CVTA 3S87A 1H7BA 3PFLA 1PEQA 3K8TA 2XAVA 2WGHA 2PFLA 3HNEA 2YAJA 2HA9A 3TBAA 5CNUA 2CVVA 2ZLGA 1XJMA 3HNFA 1H78A 1CM5A 3O0QA 1PEMA 2XO5A 1XJGA 4MTJA 2EUDA 3S8CA 3R1RA 1R9DA 1R1RA 3O0OA 5KDPA 5FAYA 2CVXA 5FAUA 1XJJA 2XAWA 2CVSA 3TB9A 1XJFA 1ZYZA 5FAWA 1PEOA 1H7AA 1H79A 3S8BA 3HNCA 5CNSA 2BQ1E 4X3VA 2R1RA 1RLRA 3HNDA 2XAXA 2XAKA 1XJEA 2XAPA 5R1RA 1QHMA 3O0NA 1HK8A 7R1RA 1R8WA 5FAVA 5A0ZA 6R1RA 1PEUA 2ZLFA 2X0XA 2XAZA 3RSRA 3S8AA 1MZOA 1XJKA 2XO4A 1XJNA 1H16A 5A0UA 1H18A 1H17A 4R1RA 2CVWA 5CNTA 5CNVA 2XAYA 1ZZDA
chains in the Genus database with same CATH topology
2F3OA 1L1LA 2CVUA 2CVYA 4ERMA 2Y8NA 2CVTA 3S87A 1H7BA 3PFLA 1PEQA 3K8TA 2XAVA 2WGHA 2PFLA 3HNEA 2YAJA 2HA9A 3TBAA 5CNUA 2CVVA 2ZLGA 1XJMA 3HNFA 1H78A 1CM5A 3O0QA 1PEMA 2XO5A 1XJGA 4MTJA 2EUDA 3S8CA 3R1RA 1R9DA 1R1RA 3O0OA 5KDPA 5FAYA 2CVXA 5FAUA 1XJJA 2XAWA 2CVSA 3TB9A 1XJFA 1ZYZA 5FAWA 1PEOA 1H7AA 1H79A 3S8BA 3HNCA 5CNSA 2BQ1E 4X3VA 2R1RA 1RLRA 3HNDA 2XAXA 2XAKA 1XJEA 2XAPA 5R1RA 1QHMA 3O0NA 1HK8A 7R1RA 1R8WA 5FAVA 5A0ZA 6R1RA 1PEUA 2ZLFA 2X0XA 2XAZA 3RSRA 3S8AA 1MZOA 1XJKA 2XO4A 1XJNA 1H16A 5A0UA 1H18A 1H17A 4R1RA 2CVWA 5CNTA 5CNVA 2XAYA 1ZZDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F3O A;  1L1L A;  2CVU A;  2CVY A;  4ERM A;  2Y8N A;  2CVT A;  3S87 A;  1H7B A;  3PFL A;  1PEQ A;  3K8T A;  2XAV A;  2WGH A;  2PFL A;  3HNE A;  2YAJ A;  2HA9 A;  3TBA A;  5CNU A;  2CVV A;  2ZLG A;  1XJM A;  3HNF A;  1H78 A;  1CM5 A;  3O0Q A;  1PEM A;  2XO5 A;  1XJG A;  4MTJ A;  2EUD A;  3S8C A;  3R1R A;  1R9D A;  1R1R A;  3O0O A;  2CVX A;  1XJJ A;  2XAW A;  2CVS A;  3TB9 A;  1XJF A;  1ZYZ A;  1PEO A;  1H7A A;  1H79 A;  3S8B A;  3HNC A;  5CNS A;  2BQ1 E;  4X3V A;  2R1R A;  1RLR A;  3HND A;  2XAX A;  2XAK A;  1XJE A;  2XAP A;  5R1R A;  1QHM A;  3O0N A;  1HK8 A;  7R1R A;  1R8W A;  6R1R A;  1PEU A;  2ZLF A;  2X0X A;  2XAZ A;  3RSR A;  3S8A A;  1MZO A;  1XJK A;  2XO4 A;  1XJN A;  1H16 A;  1H18 A;  1H17 A;  4R1R A;  2CVW A;  5CNT A;  5CNV A;  2XAY A;  1ZZD A; 
#chains in the Genus database with same CATH topology
 2F3O A;  1L1L A;  2CVU A;  2CVY A;  4ERM A;  2Y8N A;  2CVT A;  3S87 A;  1H7B A;  3PFL A;  1PEQ A;  3K8T A;  2XAV A;  2WGH A;  2PFL A;  3HNE A;  2YAJ A;  2HA9 A;  3TBA A;  5CNU A;  2CVV A;  2ZLG A;  1XJM A;  3HNF A;  1H78 A;  1CM5 A;  3O0Q A;  1PEM A;  2XO5 A;  1XJG A;  4MTJ A;  2EUD A;  3S8C A;  3R1R A;  1R9D A;  1R1R A;  3O0O A;  5KDP A;  5FAY A;  2CVX A;  5FAU A;  1XJJ A;  2XAW A;  2CVS A;  3TB9 A;  1XJF A;  1ZYZ A;  5FAW A;  1PEO A;  1H7A A;  1H79 A;  3S8B A;  3HNC A;  5CNS A;  2BQ1 E;  4X3V A;  2R1R A;  1RLR A;  3HND A;  2XAX A;  2XAK A;  1XJE A;  2XAP A;  5R1R A;  1QHM A;  3O0N A;  1HK8 A;  7R1R A;  1R8W A;  5FAV A;  5A0Z A;  6R1R A;  1PEU A;  2ZLF A;  2X0X A;  2XAZ A;  3RSR A;  3S8A A;  1MZO A;  1XJK A;  2XO4 A;  1XJN A;  1H16 A;  5A0U A;  1H18 A;  1H17 A;  4R1R A;  2CVW A;  5CNT A;  5CNV A;  2XAY A;  1ZZD A; 
#chains in the Genus database with same CATH homology
 2F3O A;  1L1L A;  2CVU A;  2CVY A;  4ERM A;  2Y8N A;  2CVT A;  3S87 A;  1H7B A;  3PFL A;  1PEQ A;  3K8T A;  2XAV A;  2WGH A;  2PFL A;  3HNE A;  2YAJ A;  2HA9 A;  3TBA A;  5CNU A;  2CVV A;  2ZLG A;  1XJM A;  3HNF A;  1H78 A;  1CM5 A;  3O0Q A;  1PEM A;  2XO5 A;  1XJG A;  4MTJ A;  2EUD A;  3S8C A;  3R1R A;  1R9D A;  1R1R A;  3O0O A;  5KDP A;  5FAY A;  2CVX A;  5FAU A;  1XJJ A;  2XAW A;  2CVS A;  3TB9 A;  1XJF A;  1ZYZ A;  5FAW A;  1PEO A;  1H7A A;  1H79 A;  3S8B A;  3HNC A;  5CNS A;  2BQ1 E;  4X3V A;  2R1R A;  1RLR A;  3HND A;  2XAX A;  2XAK A;  1XJE A;  2XAP A;  5R1R A;  1QHM A;  3O0N A;  1HK8 A;  7R1R A;  1R8W A;  5FAV A;  5A0Z A;  6R1R A;  1PEU A;  2ZLF A;  2X0X A;  2XAZ A;  3RSR A;  3S8A A;  1MZO A;  1XJK A;  2XO4 A;  1XJN A;  1H16 A;  5A0U A;  1H18 A;  1H17 A;  4R1R A;  2CVW A;  5CNT A;  5CNV A;  2XAY A;  1ZZD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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