6RXUUT

Cryo-em structure of the 90s pre-ribosome (kre33-noc4) from chaetomium thermophilum, state b1
Total Genus 611
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
611
sequence length
2245
structure length
2033
Chain Sequence
PSATSGRILKTSRGSKKTPHQKNHRWESFSQKISKLHSLDPLRKVRRHDSYLRNGLDKWAELNISRPYQAFKREINPLTESLAQILYHEDRIMDLLVEYISRHEKEALEPLLDLVTAFAHDLGVRFEKHYPRALSLIVDLAGSMHDVEVIEWTFAALAFLFKYLSRLLVPDLRPTYDVVAPLMGKAKHPGHIARFSAEAMSFLVKKAAAPSHKDKALSLFIEHVKKDLESMVGTKQFDLYSQGIMTMFAEAMKGVGEGLHSTAPDLFSALMRAVPKEELSLPERTVWSDVCCGVITSVIHHSNTDTFNTVESRVVDDAMACQQQVLFIRVFGTMAGVRKGTRIHDWASFAKALNQMLVSLGTQAKQIEVMDSSRVWKHIIVNSAIVWSRAPMDALIPAMSTFQTAMTKEPWMKWYIPFCSYLADQNAERFRGLFLKEFQKFIVAHWSQGNNEDLLCVLIPRMVESGGLPAPGSKEIFPLPQSWQDQIVSKFVRLEDTCLPKYSARLRVLKSTTVHPSTNSRIAEVLLKKLKLALRANFITSDGFHAYLRMCKAPGSIDPSLAPLLRAAAPRFCRSPSFLQALLAYEQEIKHEEHEPLINCLIANLSSPSHELRLASLQILEVLDFTPDSNNALSIMIQTEEMPLNLQSVRAIGAHLRRLGLVYSHIEQDSWLARAVPSFLWGMMTVPLAPVWDDAVEAMKKVAESKHGEEVLANIAFDWLDVPSPQWSGPYKPPNHGPLTNFECLNLIHLTEAAEATNQIIEEPGQDMLSTYEEGQKIIDLRSERARSKALKALAALPWMAERRSRKLVPHLFAFTDGSWNLADRKDLIKVFSQFSNPRVLYLSQKVYQALLKLLANGDIELQKLALKAILTWKSEGIKPYQEHLEYLLDEARFKNELTVLFQGDNKILPEHRSEVIPVLLHLLYGRAISRKGAASGRHGLHATRLAIIRQLDVEDMGSFLDIGLGPLRAIRVVDEQGVRESVFAHEPLPPRKQVGLLNMLEAVINELGTSVEPYMDALVNSVLYCLVNACRKLNESLYRVIRTTALKSLSRLFQNAPDFNWVPYRELMVKEIISPRIEKLPVESTQGVSATWRLMATWSSLPKAAPFLNVDKRILPKIVETLSIEKAKDEVKVFALDILKNLINLAQAPETESQFNELIKTELLDPNTDLILKTIGGVLHGQSDIGRELLSSAVDTVVVFAPMIEVSSHIQDMLEIATWLLNQPLRKVNPKVKGAILLILKRFIELDDLQSNQELQRKVYSTISALFGFFKDKQNRQTLAEVLDVFARREWAQEVSDICRGLNSYVEDYNTRLAAFNSITKTLDQWMPLVHNLLYFIQQPEEFGVLSSNSADGLCKFISAVESVWATPDQAAWIDVVANIILPAIYAGSRDPSETVRREILRVFGFLVSHLPQWELVAVSRQLQALRVLEAANDKREFRSKHISQFFIPLFEHFIFDGLSAQATNTIAALTLSLEWQQYRAILRRFISYVESKPDWQKRVVRLLEKEVDALRTAVASKKAEIVNNFLPTLLNYIHEVSARVPVGVIIAKLLTLLPDQLLNEKLPGVLTDICHILRSKAWESREMARDTLSKIAGILGPEKFEFIVRELRGSLQKGYQLHVLGYTLHSILLVAIPSFPQGSLDYCLGIIMTVIMDDIFGKSQDSMELLAKTASITRLSELTLPLQSLLMEKLDLRTVRKIDELLLRITKGLLENASQEVLVFCYEVIQEVYRSQKPEELPKMDPRLKRFIVQAKHTYKMTRFAIDILRAVMKKHDHLRTAANLIGFLPVLGDAVLAVEEEVKVSAFKMLTVIVKVPFKNNESNGLYKVAHKEAIKSIAMSSSTQSELAQAALKLISVILRDRRDIQMREAALDMLLSKLKDDLTEPLYRHVTFNFLRSVLDRKLETASVYDTLDHVGTVMITNDDKDTRDLARGAFFQFLREYPKRNRWEKQLKFIVANLKYREGGRLSVMECINLLLKKSDEFTQEVAATCFIPLVFVLSDKCRLAAGELIKETFRVERQSRFLTLLRGWIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
pubmed doi rcsb
molecule keywords Periodic tryptophan protein 2-like protein
molecule tags Ribosome
total genus 611
structure length 2033
sequence length 2245
ec nomenclature
pdb deposition date 2019-06-10
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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