6RXVUJ

Cryo-em structure of the 90s pre-ribosome (kre33-noc4) from chaetomium thermophilum, state b2
Total Genus 346
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
346
sequence length
1799
structure length
1090
Chain Sequence
SSLAQQLAQIAANSRSSFNVKALKASHSKSLIWEPRVAVSQTFAEIYSQCYEGFKELCHLDSRFVPFDATLFSAQSQEVDRTQMTAEENAALDKRVDSFLHLVGSRLRLMPAIKAVEWLIRRFRIHEFNTGTLLATFLPYHTIPAFVTLLSILPVQRIPIEYRFLDPYIKSLTPPPRAAIVQQATNRPDLLSAISRYTLDSCRAKQEYPGLISFWGGIMAEAVNGMIDKMRSGRRAIQLENDHLLLQQIGPVLSEAMVMKDVPGIQIASYMVVAILAAKGSLNDNILTAFMEQLVHGWTVDTLRPGLVCLTMLAQHRSAKQLSGRVAKAVIKVPDLVSSLRDISKEHQVDKLANGLVLAFVDRGDIRTLPVINSLLLSELLQEKQAKVAYKALLLAAHKIDNIRKQVGSALVRLSQAEGDVGDAIRTAIQEVDFNIEELELKLGAPSLDSTFERLSKLQPTATSCLAKDSESLFNDLCSVFLSAAVSESDLERFDATPVLSRPKAPSNSFYLSFYLRVWCGPYPTLAKVAALERVKTRLKEGDCVDKDFQAIFPYCIAALSDPAKKVRRAAADLVAVLGSALWAAKDLYGKTGTTSPLDKDALKALIRSVLIPCLEESVLHEDHVVAALVGALESHSARLSIFKFLCGHVVETPLLAVKLRLLRSLNQIRRISGTTRTDLLLPLLRWWAGLSANEAAELAAQESVDVPAIDDAVVDVVVPNHAAGLEAFFQLVKEAIRPGLLQAIFARIAKMWPSMKSDTKYSTAKTLFELTQDPKLNAEQSDVITEAVEVLRKVDLTTDILHYFIDSRVLYTGLHQNWASAAKFISEYLQILGIALDKVVKNVSSLSSIFLSAMDLRRTVAAGISAMELDEIETKTHEDALKMVYKRPIFSKFVEWATTGLPYRLYVVFGFLDAFFGSLKSIVTGYASYIVDASVKALKAVRNLWKRVLCTLAKCFEHDQDGFWQAPAHFGAVAPVLVEQFLRNDVIQDVVPAVVELAAAVESQEHYKEINTALLKHLRNGSPGVRLAVVKCQQAITAKLGEDWLHLLPEMLPYISELQDDDDEVVERENRRWIVGIEEKLGESLDSML
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ribosome
molecule keywords Periodic tryptophan protein 2-like protein
publication title Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
pubmed doi rcsb
total genus 346
structure length 1090
sequence length 1799
ec nomenclature
pdb deposition date 2019-06-10
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...