6RXXUB

Cryo-em structure of the 90s pre-ribosome (kre33-noc4) from chaetomium thermophilum, state c, poly-ala
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
901
structure length
508
Chain Sequence
GSQLKRLKASLREQGLIGPQKSKKQKRQNANDQKAEALKSIREQFNPFQFKTNARGPKFEVTTNVIKGRPELSRARSEEKRRQTILVEMQRRNKVGGIIDRRTEEEKAAEAAKKLQELEEKRLKRMRGKERLGNFSQVLIHHIAYLGDRFQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDHFHQVCTPAMLAIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPEMMNFLLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKDELSPAETSSLQIAILSTATAILKSAADTWHKLPAFIESFQPALSVAQHLLTKPNASHLPSSLTSKLNDLASHLSRLLQLSRLSRRPLELHHHRPLAIKTYIPKFDPDKHYDPNRERAELAKLKAEHKRERKGALRELRKDAQFIRREQLRIKKEKDEAYEKKFKRIIAEIQNEEGRAANEYAREKAAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
pubmed doi rcsb
molecule keywords Periodic tryptophan protein 2-like protein
molecule tags Ribosome
total genus 130
structure length 508
sequence length 901
ec nomenclature
pdb deposition date 2019-06-10
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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