6SGAFA

Body domain of the mt-ssu assemblosome from trypanosoma brucei
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
629
structure length
579
Chain Sequence
GYTFADFLRRLERSPDSHMAPLYHEHRELFVRRHDMFARVISSVTWSKGVALVAAAGYTQAVNVTIYRALLARMLLHNRHVRQCGAGSVVPWSAALRTYSEAIATHGNAVPTRMTLSALRLCTPARQWVAAISLLMLSQANDKLTLPMLIDAAGCCATPAAWEKAMALLGRFHAQSLQVLPDSIQSLRPVGTSASTVDAAAHALLPRSEGPTPEQKHILTVINKVVSAVPWQVALSNEMCRSYLTHLVASTTLRPTEKTASLTTAVQQLPWEAFVTLMKTVTATVQEGSQSNSIIREGVNLLQSEPETAIPFITTILYKLPSAEAAALFLSEATSAYRNSSSAVVAAAIRHPVVVGALLKRCADSNSWYLAASIFKSTSPTAIPCDVASDLVIQMRRANQAPLVVDVLQKYIVPSRTKLTEEAIEAALLCVLVHNRALAKASGVHWISALSWATDLLEEGVESRILQTGTTPSVGGVNHEDPTVLLRKKTLSPRILSLLIYICVNAGSPRGGLFALGYARTVSKTELELSEEITALLYCMMYDRPREAESIIQHAVKKHGEYKGKYLGRLLVASQEAKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords uS5m
publication title Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
pubmed doi rcsb
total genus 168
structure length 579
sequence length 629
ec nomenclature
pdb deposition date 2019-08-03
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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