6SWD0

Ic2 body model of cryo-em structure of a full archaeal ribosomal translation initiation complex devoid of aif1 in p. abyssi
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
36
structure length
36
Chain Sequence
MKRRPRKWKKKGRMRWKWIKKRIRRLKRQRKKERGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S ribosomal RNA
publication title Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
pubmed doi rcsb
source organism Pyrococcus abyssi (strain ge5 / orsay)
total genus 5
structure length 36
sequence length 36
ec nomenclature
pdb deposition date 2019-09-20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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