6SXIA

Antibody-anti-idiotype complex: ap33 fab (hepatitis c virus e2 antibody) - b2.1a scfv (anti-idiotype)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
119
structure length
119
Chain Sequence
QVQLQESGTELVKPGASVKLSCKASGYTFTNYWMHWVKQRQGLEWIGEINPSDGHTNYNEKFKSKATLTVDKSSSTAYMQLSSLTSEDSAVYYCARPWAFGNYGAWFAYWGQGTLVTVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Fab heavy chain
publication title Development of a structural epitope mimic: an idiotypic approach to HCV vaccine
rcsb
total genus 27
structure length 119
sequence length 119
ec nomenclature
pdb deposition date 2019-09-26
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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