6TFOA

Crystal structure of as isolated three-domain copper-containing nitrite reductase from hyphomicrobium denitrificans strain 1nes1
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
423
structure length
423
Chain Sequence
b'SHAPVVFTLRTGIAEGRMVYIGVGGDIDRQVNPKLVVHEGETVQINLINGEGAQHDAVIDQYAARSAIVSGKNASSTFSFIASKVGQFDYYCSLPGHRQAGMQGVLQVVPGNRAEMPSTAADITRDPADLPGPIGARQAKTVRIDLETVELKGQLDDKTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNAKDSLMIHSVDFHGATGPGGAAAYTQTDPGAETVVTFKALVPGIFVYHCATPSVPNHITNGMYGLLLVEPEGGLPQVDREFYVMQGEIYTVKPFGTSGEQEMDYEKLISEKPEYFLFNGSVGALTRTHPLYANVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYALGSVTSPPLTGVQTVSVPPGGATIVDFKLDRGGRYVLVDHALSRLDHGLVGFLNVDGPKNDAIMHEGPP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Copper-containing nitrite reductase
publication title Structures of substrate- and product-bound forms of a multi-domain copper nitrite reductase shed light on the role of domain tethering in protein complexes.
pubmed doi rcsb
source organism Hyphomicrobium denitrificans 1nes1
molecule tags Oxidoreductase
total genus 128
structure length 423
sequence length 423
chains with identical sequence B, C
ec nomenclature ec 1.7.2.1: Nitrite reductase (NO-forming).
pdb deposition date 2019-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00127 Copper-bind Copper binding proteins, plastocyanin/azurin family
A PF07732 Cu-oxidase_3 Multicopper oxidase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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