6TJCA

Crystal structure of the computationally designed cake3 protein
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
120
structure length
120
Chain Sequence
DGTEKWRFKTGKAIEASPVIGEDGTIYVGSNDGHLYAINPDGTEKWRFKTGKAIEASPVIGEDGTIYVGSNDGHLYAINPDGTEKWRFKTGKAIEASPVIGEDGTIYVGSNDGHLYAINP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords Cake3
publication title Structural plasticity of a designer protein sheds light on beta-propeller protein evolution.
pubmed doi rcsb
source organism Synthetic construct
total genus 30
structure length 120
sequence length 120
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2019-11-26
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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