6UTZEEE

E. coli sigma-s transcription initiation complex with a 6-nt rna ("fresh" crystal soaked with ctp and utp for 30 minutes)
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
79
structure length
79
Chain Sequence
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription, transferase/dna/rna
molecule keywords DNA-directed RNA polymerase subunit alpha
publication title Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
pubmed doi rcsb
source organism Escherichia coli
total genus 24
structure length 79
sequence length 79
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2019-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
EEE PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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