The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
177
|
sequence length |
681
|
structure length |
619
|
Chain Sequence |
SLLPVDIRQYLAVWIEDQNWQEAALGSDDSKATMLFFHFLDQLNQDPESLLLQHNLRKFCRDIQPFSQDPTQLAEMIFNLLPVESQQHEIESRILDLRAMMEKLVKSISQLKDQQDVFCFRYKIQAKGKTPTKEQKILQETLNELDKRRKEVLDASKALLGRLTTLIELLLPKLEEWKAQQQKACIRAPIDHGLEQLETWFTAGAKLLFHLRQLLKELKGLSCLVQDDPLTKGVDLRNAQVTELLQRLLHRAFVVETQPCMPQTPHRPLILKTGSKFTVRTRLLVRLQEGNESLTVEVSIDRNPPQQGFRKFNILTSNQKTLTPEKGQSQGLIWDFGYLTLVEQRSGPLGVTEELHIISFTVKYTYQGLKQELKTDTLPVVIISNMNQLSIAWASVLWFNLLSPNLQNQQFFSNPPKAPWSLLGPALSWQFSSYVGRGLNSDQLSMLRNKLFGQNCRTEDPLLSWADFTKRESPPGKLPFWTWLDKILELVHDHLKDLWNDGRIMGFVSRSQERRLLKKTMSGTFLLRFSESSEGGITCSWVEHQDDDKVLIYSVQPYTKEVLQSLPLTEIIRHYQLLPENPLRFLYPRIPRDEAFGCYYQEKYLKHRLIVVSNRQVDE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein/viral protein
|
| molecule keywords |
Signal transducer and activator of transcription 2
|
| publication title |
Structural basis for STAT2 suppression by flavivirus NS5
rcsb |
| source organism |
Homo sapiens
|
| total genus |
177
|
| structure length |
619
|
| sequence length |
681
|
| ec nomenclature | |
| pdb deposition date | 2019-11-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00017 | SH2 | SH2 domain |
| A | PF01017 | STAT_alpha | STAT protein, all-alpha domain |
| A | PF02864 | STAT_bind | STAT protein, DNA binding domain |
| A | PF02865 | STAT_int | STAT protein, protein interaction domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
