6VK90

Cryo-em structure of pila-n/c from geobacter sulfurreducens
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
61
structure length
61
Chain Sequence
FTLIELLIVVAIIGILAAIAIPQFSAYRVKAYNSAASSDLRNLKTALESAFADDQTYPPES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein fibril
molecule keywords Geopilin domain 1 protein
publication title Cryo-EM structure of PilA-N/C from Geobacter sulfurreducens
rcsb
source organism Geobacter sulfurreducens
total genus 15
structure length 61
sequence length 61
chains with identical sequence 2, 4, A, C, E, G, I, K, M, O, Q, S, U, W, Y
ec nomenclature
pdb deposition date 2020-01-19
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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