6VN0G

Bg505 sosip.v4.1 in complex with rhesus macaque fab rm20f
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
125
structure length
125
Chain Sequence
VQLVQSGGALVQPGASLRLSCAASEFSFSTHDMHWVRQAPGKGLEWVSGINIHGGTYYPDSVKGRFTISRDSAKNSLYLQMSSLRDGDTAVYFCARGGKPIYYSGGYPSWYFDLWGPGTPITISS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/immune system
molecule keywords Envelope glycoprotein gp160
publication title Mapping the immunogenic landscape of native HIV-1 envelope trimers in non-human primates
doi rcsb
source organism Human immunodeficiency virus 1
total genus 24
structure length 125
sequence length 125
chains with identical sequence H, I
ec nomenclature
pdb deposition date 2020-01-29
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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