6VWMAA

70s ribosome bound to hiv frameshifting stem-loop (fss) and p-site trna (non-rotated conformation, structure i)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
46
structure length
46
Chain Sequence
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 5S ribosomal RNA
total genus 8
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2020-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
AA PF00468 Ribosomal_L34 Ribosomal protein L34
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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