6VWNf

70s ribosome bound to hiv frameshifting stem-loop (fss) and p-site trna (non-rotated conformation, structure ii)
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
117
structure length
97
Chain Sequence
ILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.
pubmed doi rcsb
molecule keywords 5S ribosomal RNA
molecule tags Ribosome
total genus 24
structure length 97
sequence length 117
ec nomenclature
pdb deposition date 2020-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
f PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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