The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
62
|
sequence length |
325
|
structure length |
317
|
Chain Sequence |
SVWQTTDYIALSMVVYRTAIKLRNFVNIRGLTPTEMIVIPWNVMRFYCEYNTGTYGLSGNVHHKNYSMLLACKAHRPTKVGYTLSNLILTSDELTTTTFNTSPYMIHSIDDQQCLSKVYPKTDTVWPVSSMRELDYVASTVSGDNAIIPSTIFNKNRYWKQGDDALHFSHDLDLGFWFGSDYGNAYVPQNNDSMNAVGTIPTSKHINVRGVNNRGMAGHYLSFPPIRTNDGQFKLNAQFTLETEIEFEFRLWEQGVQGINSVHTNLNPANDSLWIQSYGSLVSITESKINNIQFGPTCPRVDARNKGGKMSMLFDHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Virus like particle
|
| molecule keywords |
Penaeus monodon metallodensovirus major capsid protein
|
| publication title |
Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution
rcsb |
| source organism |
Penaeus monodon metallodensovirus
|
| total genus |
62
|
| structure length |
317
|
| sequence length |
325
|
| chains with identical sequence |
2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
|
| ec nomenclature | |
| pdb deposition date | 2020-04-07 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
