6WHIC

Cryo-electron microscopy structure of the type i-f crispr rna-guided surveillance complex bound to the anti-crispr acrif9
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
333
structure length
290
Chain Sequence
LSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title AcrIF9 tethers non-sequence specific dsDNA to the CRISPR RNA-guided surveillance complex.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Immune system/dna/rna
molecule keywords CRISPR-associated protein Csy1
total genus 57
structure length 290
sequence length 333
chains with identical sequence D, E, F, G, H
ec nomenclature
pdb deposition date 2020-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF09615 Cas_Csy3 CRISPR-associated protein (Cas_Csy3)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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