6WJBA

Udp-glcnac c4-epimerase from pseudomonas protegens in complex with nad and udp-glcnac
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
307
structure length
307
Chain Sequence
ERILVTGGAGFIGSHLVDALLAKGYAVRVLDDLSTGKVGNLPMGDAGLELLVGDAADAALLADAVQGCDAVVHLAAVASVQASVEDPVATHQSNFIATLRLCEAMTAAGIRRVVFASSAAVYGNNGEGTPIAEDTPKSPLTPYAADKLASEYYLDFYRRQHGLEPVILRFFNIFGPRQDPSSPYSGVISIFSERAKAGRPITLFGDGGQTRDFVYVADLVKILVQGLESPAPAADATNVGLGGVTTLNDLIGALQQISGKPLQVSHGATRSGDIRHSKADNRRLRERFDLGTPSSLAEGLERLYRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title PelX is a UDP-N-acetylglucosamine C4-epimerase involved in Pel polysaccharide-dependent biofilm formation.
pubmed doi rcsb
source organism Pseudomonas fluorescens (strain atcc baa-477 / nrrl b-23932 / pf-5)
molecule tags Isomerase
molecule keywords NAD-dependent epimerase/dehydratase family protein
total genus 115
structure length 307
sequence length 307
chains with identical sequence B
ec nomenclature
pdb deposition date 2020-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01370 Epimerase NAD dependent epimerase/dehydratase family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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