6X5MR

Crystal structure of a stabilized pan ene bimolecular triplex with a gc-clamped polya tail
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.

Total Genus
0
sequence length
39
structure length
39
Chain Sequence
GGGUUUUUCCUUCGAAACACGAAGGUUUUUAUCCCUGCC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Targeting the Nuclear Expression Element (ENE) Triple Helix of Kaposi Sarcoma Herpesvirus Polyadenylated Nuclear RNA, PAN.
rcsb
source organism Mus musculus
molecule tags Immune system/rna
molecule keywords Light chain Fab BL-3 6
structure length 39
sequence length 39
RNA BGSU Site RNA BGSU Site Entry
chains with identical sequence r
ec nomenclature
pdb deposition date 2020-05-26
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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