6X6LAX

Cryo-em structure of cagx and cagy within the dcag3 helicobacter pylori pr
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
295
structure length
164
Chain Sequence
KNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Cag pathogenicity island protein (Cag8)
publication title Cryo-EM analysis of the Helicobacter pylori Cag type IV secretion system reveals an expanded core complex and unique species-specific components
rcsb
total genus 37
structure length 164
sequence length 295
chains with identical sequence BX, CX, DX, EX, FX, GX, HX, IX, JX, KX, LX, MX, NX, OX, PX, QX
ec nomenclature
pdb deposition date 2020-05-28
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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