6X6SAM

Cryo-em structure of the helicobacter pylori omc
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
180
structure length
180
Chain Sequence
NKKASRLALSYKQAIEEYSNNVSNLLSRKELDNIDYYLQLERNKFDSKAKDIAQKATNTLIFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQSKKSILKKTNEYNIFVDSDPMMSDKTTMQKEHYKIFNFFKTVVSAYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
molecule keywords Type IV secretion system apparatus protein Cag3
publication title Cryo-EM analysis of the Helicobacter pylori Cag type IV secretion system reveals an expanded core complex and unique species-specific components
rcsb
total genus 74
structure length 180
sequence length 180
chains with identical sequence Am, BM, Bm, CM, Cm, DM, Dm, EM, Em, FM, Fm, GM, Gm, HM, Hm, IM, Im, JM, Jm, KM, Km, LM, Lm, MM, Mm, NM, Nm
ec nomenclature
pdb deposition date 2020-05-29
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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