6X6T1

Cryo-em structure of an escherichia coli coupled transcription-translation complex b1 (ttc-b1) containing an mrna with a 24 nt long spacer, transcription factors nusa and nusg, and fmet-trnas at p-site and e-site
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
110
structure length
110
Chain Sequence
METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords 50S ribosomal protein L21
publication title Structural basis of transcription-translation coupling.
pubmed doi rcsb
source organism Escherichia coli
total genus 27
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2020-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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