6XA1SE

Structure of a drug-like compound stalled human translation termination complex
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
258
structure length
258
Chain Sequence
ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 60S ribosomal protein L8
publication title Selectively stalling of ribosome translation termination by a drug-like compound
rcsb
source organism Homo sapiens
total genus 40
structure length 258
sequence length 258
ec nomenclature
pdb deposition date 2020-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
SE PF00467 KOW KOW motif
SE PF00900 Ribosomal_S4e Ribosomal family S4e
SE PF01479 S4 S4 domain
SE PF08071 RS4NT RS4NT (NUC023) domain
SE PF16121 40S_S4_C 40S ribosomal protein S4 C-terminus
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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