6XBWr

Cryo-em structure of v-atpase from bovine brain, state 1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
TYNLAYKYNFEYPVVFNLVLWIMIGLALTLIVTCYNIWNMDPGYDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Proton transport
molecule keywords V-type proton ATPase catalytic subunit A
publication title Cryo-EM structures of intact V-ATPase from bovine brain.
pubmed doi rcsb
total genus 12
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2020-06-07
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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