6XDRZ

Escherichia coli transcription-translation complex b (ttc-b) containing an 27 nt long mrna spacer, nusg, and fmet-trnas at e-site and p-site
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
30
structure length
30
Chain Sequence
SITKDQIIEAVAAMSVMDVVELISAMEEKF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
rcsb
source organism Escherichia coli
molecule tags Ribosome,transcription/translation
molecule keywords 50S ribosomal protein L21
structure length 30
sequence length 30
ec nomenclature
pdb deposition date 2020-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Z PF00542 Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Z PF16320 Ribosomal_L12_N Ribosomal protein L7/L12 dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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