6XYW2

Structure of the plant mitochondrial ribosome
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.

Total Genus
119
sequence length
1743
structure length
1743
Chain Sequence
UAGUCAAAAGAAGAGUUUGAUUCUGGCUCAGAAGGAACGCUAGCUAUAUGCUUAACACAUGCAAGUCGAACGUUGUUCUCGGAGCUAGGCAGCUCCUAGCUCCUUGUCUCGGGGAAGAGUUGAGAACAAAGUGGCGAACGGGUGAGUAAGGCGUGGGAAUCUGCCGAACAGUUCGGGCCAAAUCCUGAAGAAAGCUAAAAAGCGCUGUUUGAUGAGCCUGCGUAGUAUUAGGUAGUUGGUUAGGUAAAGGCUGACCAAGCCAAUGAUGCUUAGCUGGUCUUUUCGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCGGACUCCCACGGGGGGCAGCAGUGGGGAAUCUUGGACAAUGGGCGAAAGCCGAUCCAGCAAUAUCGCGUGAGUGAAGAAAGGCAAUGCCGCUUGUAAAGCUCUUUCGUCGAGUGCGCGAUCAUGACAGGACUCGAGGAAGAAGCCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAAACGGGGGGGGCAAGUGUUCUUCGGAAUGACUGGGCGUAAAGGGCACGUAGGCGGUGAAUCGGGUUGAAAGUGAAAGUCGCCAAAAAGUGGCGGAAUGCUUUCGAAACCAAUUCACUUGAGUGAGACAGAGGAGAGUGGAAUUUCGUGUGGAGGGGUGAAAUCUACAGAUCUACGAAGGAACGCCAAAAGCGAAGGCAGCUCUCUGGGUCCCUACCGACGCUGGGGUGCGAAAGCAUGGGGAGCGAACGGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGAUGAGUGUUCGCCCUUGGUCUACGCAGAUCAGGGGCUCAGCUAACGCGUGAACACUCCGCCUGGGGAGUACGGUCGCAAGACCAAAACUCAAAGGAAUUGACGGGGGCCUGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUACAACGCGCAAAACCUUACCAGCCCUUGACAUAUGAACAACAAAACCUAUCCUUAACGGGAUGGUACUCACUUUCAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUUGGUCAAGUCCUAUAACGAGCGAAACCCUCGUCUUGUGUUGCUCAGACAUGCGCCUAAGGAGAAAGGCUUGAAAACCGAAGUGAGCCAAGGAGCCGAGUGAUGUGCCAGACCUAGCUAGGCCAACUCGACGUCGCGACGUCGAGUUGGCGGCGGAGAAAGACUCGGCAUUCAGGCGAGCCGCCCGGUGGUGUGGGACGAAGUAAGUGGGUUUAGUACGCCCUGCCAAAACGGCUCCGAAACAAACAAAAAGGUGCGUGCCGCACUCACGAGGGACUGCCAGUGAUAUACUGGAGGAAGGUGGGGAUGACGUCAAGUCCGCAUGGCCCUUAUGGGCUGGGCCACACACGUGCUACAAUGGCAAUUACAAUGGGAAGCAAGGCUGUAAGGCGGAGCGAAUCCGGAAAGAUUGCCUCAGUUCGGAUUGUUCUCUGCAACUCGGGAACAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUAUGUACCCGGGCCCUGUACACACCGCCCGUCACACCCUGGGAAUUGGUUUCGCCCGAAGCAUCGGAACAAUGAUCACCCAUGACUUCUGUGUAACACUAGUGCCACAAAGGCUUUUGGUGGUCUUAUUGGCGCAUACCACGGUGGGGUCUUCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGUGGCUGGAUUGAAUCC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ribosome
molecule keywords 60S ribosomal protein L2, mitochondrial
publication title Cryo-EM structure of the RNA-rich plant mitochondrial ribosome
doi rcsb
total genus 119
structure length 1743
sequence length 1743
RNA BGSU Site RNA BGSU Site Entry
ec nomenclature
pdb deposition date 2020-01-31
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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