6YFRAA

Virus-like particle of bacteriophage nt-391
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
123
structure length
123
Chain Sequence
ASLPVTQYSPPVTPLGKSTWNVTGSTNPPGLVPQVVQTESINARKSNIMSKISVYYYIPSTNSVSCCTEWDTIRCEFSLTLLQLSSNTDVAARTVDVLDTMISFLAKRRNSILAGNLLLPDNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus like particle
molecule keywords coat protein
publication title Expansion of the structural diversity of single-stranded RNA bacteriophages
rcsb
source organism Leviviridae sp.
total genus 23
structure length 123
sequence length 123
chains with identical sequence AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, CA, CB, CC, CD, CE, CF, CG, CH
ec nomenclature
pdb deposition date 2020-03-26
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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