6YROA

Streptococcus suis sadp mutant - n285d
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
204
structure length
204
Chain Sequence
QQSPLIQTSNADYKSGKDQEKLRTSVSINLLKAEEGQIQWKVTFDTSEWSFNVKHGGVYFILPNGLDLTKIVDNNQHDITASFPTDINDYRNSGQEKYRFFSSKQGLDNENGFNSQWNWSAGQANPSETVNSWKSGNRLSKIYFIDQITDTTELTYTLTAKVTEPNQQSFPLLAVMKSFTYTNSKSTEVTSLGAREITLEKEKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords SadP
publication title Streptococcus suis SadP adhesin binding mechanism to the host globo series glycolipid receptors
rcsb
source organism Streptococcus suis
total genus 62
structure length 204
sequence length 204
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2020-04-20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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