6YWSN

The structure of the large subunit of the mitoribosome from neurospora crassa
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
133
structure length
133
Chain Sequence
QPPISQQVKELLPVLAAQPGHYTTIHIHGKPYLVTEGDTVKLPFKMPGVAPGDVLRLNRASVIGSRDLTLQGAPYVDERLFECRAIVMGTESEPMRVMIKKKRRCRKKKHVFSKHKYTVLRINQLKINDVSSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Translation
molecule keywords RNA (2820-MER)
publication title Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
pubmed doi rcsb
total genus 18
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2020-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00829 Ribosomal_L21p Ribosomal prokaryotic L21 protein
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...