6YWYC

The structure of the mitoribosome from neurospora crassa with bound trna at the p-site
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
307
structure length
307
Chain Sequence
VKYGWSTLPKRSRPTRFNQVTQGLPAPTSGPAAALKRREKTTPLRTGVLAVKKGMTVFMGRTGARIPCTVLQLDRVQVVANKTRAKNGYWAVQVGLGERRAENVGAPQLGYYEAKGIPPKQTLAEFKVRNQDGLLPVGVQLFPDWFHVGQVVDVRGITRGMGFAGGMKRHGFAGQEASHGNSLNHRTIGSVGGSQGSGSRVLPGKKMPGRMGAQQHTVQNLPILMVDNELGIVVVKGAVAGHKGAVVKVQDAVKKAPPPEEFVEATKQLLNERFPDAEEKLQAARKLHLELKEARRQGLIDSLIKNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords 23S rRNA
publication title Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
pubmed doi rcsb
total genus 56
structure length 307
sequence length 307
ec nomenclature
pdb deposition date 2020-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00297 Ribosomal_L3 Ribosomal protein L3
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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