6Z1PAu

Structure of the mitochondrial ribosome from tetrahymena thermophila
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
169
structure length
169
Chain Sequence
TGFSREKYRKLARGFFGRNKNCLRTMAPRVDKALRYSFRDRRARRRIYRKEWIQTINAAVREHNTPYNRFIWALNQSNIILDRKILSNLAINEPFSFKAVLDEVRIQAQLQSKPHPRIINPIEAYAKKLIIDGALKPVQTQVEEPLPYLFGKRQNVEEIKKKYQAQVHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords LSU rRNA_1
publication title The mitochondrial ribosome from Tetrahymena thermophila
rcsb
total genus 33
structure length 169
sequence length 169
ec nomenclature
pdb deposition date 2020-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Au PF00453 Ribosomal_L20 Ribosomal protein L20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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