6Z1PBo

Structure of the mitochondrial ribosome from tetrahymena thermophila
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
179
structure length
179
Chain Sequence
LMTMSKSGRQFARDKPLEEFIPKGLEKLKQKEQVTINTNYKAGFTSEELEPYNEMVKRALKLNNASPFEITQFKVQQAIQKFKVSPRDTGSAAIQVAVRTEKLIKMIKHCQENRQDKYAGRALVRLLEQRRKWLDYLRFTDYHRYKWICEEFCIPDQPPLNGHHKANFRGEPNRQVKTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords LSU rRNA_1
publication title The mitochondrial ribosome from Tetrahymena thermophila
rcsb
total genus 35
structure length 179
sequence length 179
ec nomenclature
pdb deposition date 2020-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Bo PF00312 Ribosomal_S15 Ribosomal protein S15
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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