6Z5PA

The rsl-r8 - sulfonato-calix[8]arene complex, p3 form, tris-hcl ph 8.5
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
90
structure length
90
Chain Sequence
SSVQTAATSWGTVPSIRVYTANNGRITERCWDGRGWYTGAFNRPGRNVSVTSWLVGSAIHIRVYASTGTTTTEWCWDGNGWTRGAYTATN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Fucose-binding lectin protein
publication title Facile Fabrication of Protein-Macrocycle Frameworks.
pubmed doi rcsb
source organism Ralstonia solanacearum
total genus 13
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 2020-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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