6Z6W1

Poliovirus type 3 (strain saukett) stabilised virus-like particle (pv3 sc8) from a mammalian expression system.
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
235
structure length
232
Chain Sequence
QRRSRSESTIESFFARGACVAIIEVDNEEPTQKLFAMWRITYKDTVQLRRKLEFFTYSRFDMELTFVVTANFTNTNNGHALNQVYQIMYIPPGAPTPKSWDDYTWQTSSNPSIFYTYGAAPARISVPYVGLANAYSHFYDGFAKVPLKTDANDQIGDSLYSAMTVDDFGVLAIRVVNDHNPTKVTSKVRIYMKPKHVRVWCPRPPRAVPYYGPGVDYKDNLNPLSEKGLTTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus like particle
molecule keywords Capsid proteins, VP1
publication title Mammalian expression of virus-like particles as a proof of principle for next generation polio vaccines.
pubmed doi rcsb
source organism Human poliovirus 3
total genus 37
structure length 232
sequence length 235
ec nomenclature
pdb deposition date 2020-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00073 Rhv picornavirus capsid protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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