6ZCDV

Vegf-a 13:107 crystallized with 1c bicyclic peptide
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
95
structure length
95
Chain Sequence
EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Peptide binding protein
molecule keywords Derived from V114 peptide
publication title Structure and thermodynamics of VEGF-A ligands: bicyclic peptides stabilized by a lactam bridge.
rcsb
source organism Homo sapiens
total genus 15
structure length 95
sequence length 95
chains with identical sequence W
ec nomenclature
pdb deposition date 2020-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF00341 PDGF PDGF/VEGF domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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