6ZCKD

Coxsackievirus b4 in complex with capsid binder compound 48
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
58
structure length
58
Chain Sequence
b'GAQVSTQKTGAHIIHYTNINYYKDAASNSANRQDFTQDPSKFTEPVKDVMIKSLPALN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Genome polyprotein
publication title Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses
rcsb
molecule tags Virus
total genus 1
structure length 58
sequence length 58
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2020-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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