6ZNBAA

Phage sam lyase in apo state
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
129
structure length
125
Chain Sequence
SLMERLGGGGFSARIFVGLNVGDKPTYTIEDVVKDTIAIRKRQGILPDASFVAQRGVYTGQLVTENSVQIIIIDLEGLSKEDFTGKVQALGKELREDFKQESVIVEIQERGIVQDVYSITAEWYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Phage SAM lyase Svi3-3
publication title Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family.
pubmed doi rcsb
source organism Bacteriophage sp.
total genus 30
structure length 125
sequence length 129
ec nomenclature
pdb deposition date 2020-07-06
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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