The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
262
|
structure length |
262
|
Chain Sequence |
ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Translation
|
| molecule keywords |
18S ribosomal RNA
|
| publication title |
SARS-CoV-2-Nsp1-40S complex, composite map
rcsb |
| source organism |
Severe acute respiratory syndrome coronavirus 2
|
| total genus |
51
|
| structure length |
262
|
| sequence length |
262
|
| ec nomenclature | |
| pdb deposition date | 2020-07-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| E | PF00467 | KOW | KOW motif |
| E | PF00900 | Ribosomal_S4e | Ribosomal family S4e |
| E | PF01479 | S4 | S4 domain |
| E | PF08071 | RS4NT | RS4NT (NUC023) domain |
| E | PF16121 | 40S_S4_C | 40S ribosomal protein S4 C-terminus |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
