6ZUOH

Human rio1(kd)-stha late pre-40s particle, structural state a (pre 18s rrna cleavage)
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
186
structure length
186
Chain Sequence
IVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords pre-18S ribosomal RNA
publication title The final step of 40S ribosomal subunit maturation is controlled by a dual key lock.
pubmed doi rcsb
total genus 20
structure length 186
sequence length 186
ec nomenclature
pdb deposition date 2020-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF01251 Ribosomal_S7e Ribosomal protein S7e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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