6ZVJv

Structure of a human abce1-bound 43s pre-initiation complex - state ii
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
116
structure length
111
Chain Sequence
VNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIPRKVVGCSCVVVKDYGKESQAKDVIEEYFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 40S ribosomal protein SA
publication title Structural inventory of native ribosomal ABCE1-43S pre-initiation complexes
rcsb
total genus 17
structure length 111
sequence length 116
ec nomenclature
pdb deposition date 2020-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
v PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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