6ZVKM2

The halastavi arva virus (halv) intergenic region ires promotes translation by the simplest possible initiation mechanism
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
163
structure length
156
Chain Sequence
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKKGLRITVKLTIQNRQAQIEVVPSASALIIKALPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.
pubmed doi rcsb
molecule keywords Ribosomal protein L14
molecule tags Translation
source organism Halastavi arva rna virus
total genus 11
structure length 156
sequence length 163
ec nomenclature
pdb deposition date 2020-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M2 PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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