7GEPA

Sulfite reductase hemoprotein in complex with a partially oxidized sulfide species
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
490
structure length
469
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 161
structure length 469
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 7gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 7gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 7gepA02
3MM8A 2AKJA 3OR2A 1ZJ9A 3VKRA 4S3AA 3GEOA 4AOPA 4GEPA 3B0GA 2V4JB 3MMCB 4S38A 2AOPA 3MMAA 3MM8B 4S3BA 3VKTA 3VLXA 8GEPA 3MMCA 4G39A 4G9PA 3OR2B 1AOPA 4S3FA 7GEPA 3B0MA 3MMAB 3MMBA 4S23A 4S3DA 3AOPA 4G38A 3VKSA 3B0HA 3VLZA 4S39A 3VKPA 3B0JA 3MMBB 5GEPA 5AOPA 3B0NA 1ZJ8A 3MM5A 4HTRA 4S3CA 2GEPA 3B0LA 3MM9A 3MM6A 3NOYA 4S3EA 3OR1A 3MM5B 3MM9B 2Y0FA 3MM7B 3MM6B 3VM0A 2XSJA 3MM7A 3OR1B 3VM1A 3VKQA 3VLYA 2XSJB 2V4JA 6GEPA
chains in the Genus database with same CATH superfamily
3MM8A 2AKJA 3OR2A 1ZJ9A 3VKRA 4S3AA 3GEOA 4AOPA 4GEPA 3B0GA 2V4JB 3MMCB 4S38A 2AOPA 3MMAA 3MM8B 4S3BA 3VKTA 3VLXA 8GEPA 3MMCA 4G39A 4G9PA 3OR2B 1AOPA 4S3FA 7GEPA 3B0MA 3MMAB 3MMBA 4S23A 4S3DA 3AOPA 4G38A 3VKSA 3B0HA 3VLZA 4S39A 3VKPA 3B0JA 3MMBB 5GEPA 5AOPA 3B0NA 1ZJ8A 3MM5A 4HTRA 4S3CA 2GEPA 3B0LA 3MM9A 3MM6A 3NOYA 4S3EA 3OR1A 3MM5B 3MM9B 2Y0FA 3MM7B 3MM6B 3VM0A 2XSJA 3MM7A 3OR1B 3VM1A 3VKQA 3VLYA 2XSJB 2V4JA 6GEPA
chains in the Genus database with same CATH topology
3MM8A 2AKJA 3OR2A 1ZJ9A 3VKRA 4S3AA 3GEOA 4AOPA 4GEPA 3B0GA 2V4JB 3MMCB 4S38A 2AOPA 3MMAA 3MM8B 4S3BA 3VKTA 3VLXA 8GEPA 3MMCA 4G39A 4G9PA 3OR2B 1AOPA 4S3FA 7GEPA 3B0MA 3MMAB 3MMBA 4S23A 4S3DA 3AOPA 4G38A 3VKSA 3B0HA 3VLZA 4S39A 3VKPA 3B0JA 3MMBB 5GEPA 5AOPA 3B0NA 1ZJ8A 3MM5A 4HTRA 4S3CA 2GEPA 3B0LA 3MM9A 3MM6A 3NOYA 4S3EA 3OR1A 3MM5B 3MM9B 2Y0FA 3MM7B 3MM6B 3VM0A 2XSJA 3MM7A 3OR1B 3VM1A 3VKQA 3VLYA 2XSJB 2V4JA 6GEPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MM8 A;  2AKJ A;  3OR2 A;  1ZJ9 A;  3VKR A;  4S3A A;  3GEO A;  4AOP A;  4GEP A;  3B0G A;  2V4J B;  3MMC B;  4S38 A;  2AOP A;  3MMA A;  3MM8 B;  4S3B A;  3VKT A;  3VLX A;  8GEP A;  3MMC A;  4G39 A;  4G9P A;  3OR2 B;  1AOP A;  4S3F A;  7GEP A;  3B0M A;  3MMA B;  3MMB A;  4S23 A;  4S3D A;  3AOP A;  4G38 A;  3VKS A;  3B0H A;  3VLZ A;  4S39 A;  3VKP A;  3B0J A;  3MMB B;  5GEP A;  5AOP A;  3B0N A;  1ZJ8 A;  3MM5 A;  4HTR A;  4S3C A;  2GEP A;  3B0L A;  3MM9 A;  3MM6 A;  3NOY A;  4S3E A;  3OR1 A;  3MM5 B;  3MM9 B;  2Y0F A;  3MM7 B;  3MM6 B;  3VM0 A;  2XSJ A;  3MM7 A;  3OR1 B;  3VM1 A;  3VKQ A;  3VLY A;  2XSJ B;  2V4J A;  6GEP A; 
#chains in the Genus database with same CATH topology
 3MM8 A;  2AKJ A;  3OR2 A;  1ZJ9 A;  3VKR A;  4S3A A;  3GEO A;  4AOP A;  4GEP A;  3B0G A;  2V4J B;  3MMC B;  4S38 A;  2AOP A;  3MMA A;  3MM8 B;  4S3B A;  3VKT A;  3VLX A;  8GEP A;  3MMC A;  4G39 A;  4G9P A;  3OR2 B;  1AOP A;  4S3F A;  7GEP A;  3B0M A;  3MMA B;  3MMB A;  4S23 A;  4S3D A;  3AOP A;  4G38 A;  3VKS A;  3B0H A;  3VLZ A;  4S39 A;  3VKP A;  3B0J A;  3MMB B;  5GEP A;  5AOP A;  3B0N A;  1ZJ8 A;  3MM5 A;  4HTR A;  4S3C A;  2GEP A;  3B0L A;  3MM9 A;  3MM6 A;  3NOY A;  4S3E A;  3OR1 A;  3MM5 B;  3MM9 B;  2Y0F A;  3MM7 B;  3MM6 B;  3VM0 A;  2XSJ A;  3MM7 A;  3OR1 B;  3VM1 A;  3VKQ A;  3VLY A;  2XSJ B;  2V4J A;  6GEP A; 
#chains in the Genus database with same CATH homology
 3MM8 A;  2AKJ A;  3OR2 A;  1ZJ9 A;  3VKR A;  4S3A A;  3GEO A;  4AOP A;  4GEP A;  3B0G A;  2V4J B;  3MMC B;  4S38 A;  2AOP A;  3MMA A;  3MM8 B;  4S3B A;  3VKT A;  3VLX A;  8GEP A;  3MMC A;  4G39 A;  4G9P A;  3OR2 B;  1AOP A;  4S3F A;  7GEP A;  3B0M A;  3MMA B;  3MMB A;  4S23 A;  4S3D A;  3AOP A;  4G38 A;  3VKS A;  3B0H A;  3VLZ A;  4S39 A;  3VKP A;  3B0J A;  3MMB B;  5GEP A;  5AOP A;  3B0N A;  1ZJ8 A;  3MM5 A;  4HTR A;  4S3C A;  2GEP A;  3B0L A;  3MM9 A;  3MM6 A;  3NOY A;  4S3E A;  3OR1 A;  3MM5 B;  3MM9 B;  2Y0F A;  3MM7 B;  3MM6 B;  3VM0 A;  2XSJ A;  3MM7 A;  3OR1 B;  3VM1 A;  3VKQ A;  3VLY A;  2XSJ B;  2V4J A;  6GEP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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