7GEPA

Sulfite reductase hemoprotein in complex with a partially oxidized sulfide species
Total Genus 161
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
490
structure length
469
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
total genus 161
structure length 469
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 7gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 7gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 7gepA02
4AOPA 3B0JA 4S3FA 4HTRA 3MM7B 3VLZA 7GEPA 4GEPA 3MM5A 3B0MA 1AOPA 3VKRA 3MM7A 3AOPA 3B0LA 5AOPA 3VKPA 4G9PA 6GEPA 3MM9A 4S3DA 3GEOA 2AOPA 3MM6A 3OR1B 4S39A 1ZJ8A 4S23A 3MM6B 3OR1A 3MMBB 3MMCA 3MM5B 3VKTA 3MMBA 5GEPA 3VKQA 3OR2B 3VKSA 3MM8A 3VM1A 3OR2A 2AKJA 2XSJB 3MM8B 3MM9B 2XSJA 3VM0A 4S3AA 2Y0FA 8GEPA 3NOYA 3B0HA 3MMCB 4S3EA 3B0NA 4G38A 4G39A 1ZJ9A 4S38A 3VLXA 4S3CA 3MMAB 2V4JA 3VLYA 3MMAA 4S3BA 2V4JB 3B0GA 2GEPA
chains in the Genus database with same CATH superfamily
4AOPA 3B0JA 4S3FA 4HTRA 3MM7B 3VLZA 7GEPA 4GEPA 3MM5A 3B0MA 1AOPA 3VKRA 3MM7A 3AOPA 3B0LA 5AOPA 3VKPA 4G9PA 6GEPA 3MM9A 4S3DA 3GEOA 2AOPA 3MM6A 3OR1B 4S39A 1ZJ8A 4S23A 3MM6B 3OR1A 3MMBB 3MMCA 3MM5B 3VKTA 3MMBA 5GEPA 3VKQA 3OR2B 3VKSA 3MM8A 3VM1A 3OR2A 2AKJA 2XSJB 3MM8B 3MM9B 2XSJA 3VM0A 4S3AA 2Y0FA 8GEPA 3NOYA 3B0HA 3MMCB 4S3EA 3B0NA 4G38A 4G39A 1ZJ9A 4S38A 3VLXA 4S3CA 3MMAB 2V4JA 3VLYA 3MMAA 4S3BA 2V4JB 3B0GA 2GEPA
chains in the Genus database with same CATH topology
4AOPA 3B0JA 4S3FA 4HTRA 3MM7B 3VLZA 7GEPA 4GEPA 3MM5A 3B0MA 1AOPA 3VKRA 3MM7A 3AOPA 3B0LA 5AOPA 3VKPA 4G9PA 6GEPA 3MM9A 4S3DA 3GEOA 2AOPA 3MM6A 3OR1B 4S39A 1ZJ8A 4S23A 3MM6B 3OR1A 3MMBB 3MMCA 3MM5B 3VKTA 3MMBA 5GEPA 3VKQA 3OR2B 3VKSA 3MM8A 3VM1A 3OR2A 2AKJA 2XSJB 3MM8B 3MM9B 2XSJA 3VM0A 4S3AA 2Y0FA 8GEPA 3NOYA 3B0HA 3MMCB 4S3EA 3B0NA 4G38A 4G39A 1ZJ9A 4S38A 3VLXA 4S3CA 3MMAB 2V4JA 3VLYA 3MMAA 4S3BA 2V4JB 3B0GA 2GEPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AOP A;  3B0J A;  4S3F A;  4HTR A;  3MM7 B;  3VLZ A;  7GEP A;  4GEP A;  3MM5 A;  3B0M A;  1AOP A;  3VKR A;  3MM7 A;  3AOP A;  3B0L A;  5AOP A;  3VKP A;  4G9P A;  6GEP A;  3MM9 A;  4S3D A;  3GEO A;  2AOP A;  3MM6 A;  3OR1 B;  4S39 A;  1ZJ8 A;  4S23 A;  3MM6 B;  3OR1 A;  3MMB B;  3MMC A;  3MM5 B;  3VKT A;  3MMB A;  5GEP A;  3VKQ A;  3OR2 B;  3VKS A;  3MM8 A;  3VM1 A;  3OR2 A;  2AKJ A;  2XSJ B;  3MM8 B;  3MM9 B;  2XSJ A;  3VM0 A;  4S3A A;  2Y0F A;  8GEP A;  3NOY A;  3B0H A;  3MMC B;  4S3E A;  3B0N A;  4G38 A;  4G39 A;  1ZJ9 A;  4S38 A;  3VLX A;  4S3C A;  3MMA B;  2V4J A;  3VLY A;  3MMA A;  4S3B A;  2V4J B;  3B0G A;  2GEP A; 
#chains in the Genus database with same CATH topology
 4AOP A;  3B0J A;  4S3F A;  4HTR A;  3MM7 B;  3VLZ A;  7GEP A;  4GEP A;  3MM5 A;  3B0M A;  1AOP A;  3VKR A;  3MM7 A;  3AOP A;  3B0L A;  5AOP A;  3VKP A;  4G9P A;  6GEP A;  3MM9 A;  4S3D A;  3GEO A;  2AOP A;  3MM6 A;  3OR1 B;  4S39 A;  1ZJ8 A;  4S23 A;  3MM6 B;  3OR1 A;  3MMB B;  3MMC A;  3MM5 B;  3VKT A;  3MMB A;  5GEP A;  3VKQ A;  3OR2 B;  3VKS A;  3MM8 A;  3VM1 A;  3OR2 A;  2AKJ A;  2XSJ B;  3MM8 B;  3MM9 B;  2XSJ A;  3VM0 A;  4S3A A;  2Y0F A;  8GEP A;  3NOY A;  3B0H A;  3MMC B;  4S3E A;  3B0N A;  4G38 A;  4G39 A;  1ZJ9 A;  4S38 A;  3VLX A;  4S3C A;  3MMA B;  2V4J A;  3VLY A;  3MMA A;  4S3B A;  2V4J B;  3B0G A;  2GEP A; 
#chains in the Genus database with same CATH homology
 4AOP A;  3B0J A;  4S3F A;  4HTR A;  3MM7 B;  3VLZ A;  7GEP A;  4GEP A;  3MM5 A;  3B0M A;  1AOP A;  3VKR A;  3MM7 A;  3AOP A;  3B0L A;  5AOP A;  3VKP A;  4G9P A;  6GEP A;  3MM9 A;  4S3D A;  3GEO A;  2AOP A;  3MM6 A;  3OR1 B;  4S39 A;  1ZJ8 A;  4S23 A;  3MM6 B;  3OR1 A;  3MMB B;  3MMC A;  3MM5 B;  3VKT A;  3MMB A;  5GEP A;  3VKQ A;  3OR2 B;  3VKS A;  3MM8 A;  3VM1 A;  3OR2 A;  2AKJ A;  2XSJ B;  3MM8 B;  3MM9 B;  2XSJ A;  3VM0 A;  4S3A A;  2Y0F A;  8GEP A;  3NOY A;  3B0H A;  3MMC B;  4S3E A;  3B0N A;  4G38 A;  4G39 A;  1ZJ9 A;  4S38 A;  3VLX A;  4S3C A;  3MMA B;  2V4J A;  3VLY A;  3MMA A;  4S3B A;  2V4J B;  3B0G A;  2GEP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...