7MSIA

Type iii antifreeze protein isoform hplc 12
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
66
structure length
66
Chain Sequence
MAQASVVANQLIPINTYLTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze
molecule keywords TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12
publication title The effects of steric mutations on the structure of type III antifreeze protein and its interaction with ice.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 15
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1997-09-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 7msiA00
8MSIA 3AMEA 6MSIA 9AMEA 7MSIA 1MSJA 4UR6A 1B7JA 1JABA 2AMEA 2ZDRA 1AMEA 1KDEA 1VLIA 1XUUA 4MSIA 1UCSA 1WVOA 3RDNA 1XUZA 8AMEA 2MSIA 2JIAA 4IPIA 1C89A 2LX3A 3FRNA 4IPJA 6AMEA 3CM4A 3G8RA 2MSJA 1EKLA 1HG7A 1B7KA 4UR4A 9MSIA 1GZIA 1C8AA 4AMEA 2LX2A 3NLAA 1KDFA 5MSIA 1MSIA 3QF6A 2WQPA 7AMEA 1OPSA 1B7IA 3MSIA 2SPGA 4NY6A
chains in the Genus database with same CATH superfamily
8MSIA 3AMEA 6MSIA 9AMEA 7MSIA 1MSJA 4UR6A 1B7JA 1JABA 2AMEA 2ZDRA 1AMEA 1KDEA 1VLIA 1XUUA 4MSIA 1UCSA 1WVOA 3RDNA 1XUZA 8AMEA 2MSIA 3K3SA 2JIAA 4IPIA 1C89A 2LX3A 3FRNA 4IPJA 6AMEA 3CM4A 3LAZA 3G8RA 2MSJA 1EKLA 1HG7A 1B7KA 4UR4A 9MSIA 1GZIA 1C8AA 4AMEA 2LX2A 3NLAA 1KDFA 5MSIA 1MSIA 3QF6A 2WQPA 7AMEA 1OPSA 1B7IA 3MSIA 2SPGA 4NY6A
chains in the Genus database with same CATH topology
8MSIA 3AMEA 6MSIA 9AMEA 7MSIA 1MSJA 4UR6A 1B7JA 1JABA 2AMEA 2ZDRA 1AMEA 1KDEA 1VLIA 1XUUA 4MSIA 1UCSA 1WVOA 3RDNA 1XUZA 8AMEA 2MSIA 2JIAA 4IPIA 1C89A 2LX3A 3FRNA 4IPJA 6AMEA 3CM4A 3G8RA 2MSJA 1EKLA 1HG7A 1B7KA 4UR4A 9MSIA 1GZIA 1C8AA 4AMEA 2LX2A 3NLAA 1KDFA 5MSIA 1MSIA 3QF6A 2WQPA 7AMEA 1OPSA 1B7IA 3MSIA 2SPGA 4NY6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 8MSI A;  3AME A;  6MSI A;  9AME A;  7MSI A;  1MSJ A;  4UR6 A;  1B7J A;  1JAB A;  2AME A;  2ZDR A;  1AME A;  1KDE A;  1VLI A;  1XUU A;  4MSI A;  1UCS A;  1WVO A;  3RDN A;  1XUZ A;  8AME A;  2MSI A;  2JIA A;  4IPI A;  1C89 A;  2LX3 A;  3FRN A;  4IPJ A;  6AME A;  3CM4 A;  3G8R A;  2MSJ A;  1EKL A;  1HG7 A;  1B7K A;  4UR4 A;  9MSI A;  1GZI A;  1C8A A;  4AME A;  2LX2 A;  3NLA A;  1KDF A;  5MSI A;  1MSI A;  3QF6 A;  2WQP A;  7AME A;  1OPS A;  1B7I A;  3MSI A;  2SPG A;  4NY6 A; 
#chains in the Genus database with same CATH topology
 8MSI A;  3AME A;  6MSI A;  9AME A;  7MSI A;  1MSJ A;  4UR6 A;  1B7J A;  1JAB A;  2AME A;  2ZDR A;  1AME A;  1KDE A;  1VLI A;  1XUU A;  4MSI A;  1UCS A;  1WVO A;  3RDN A;  1XUZ A;  8AME A;  2MSI A;  3K3S A;  2JIA A;  4IPI A;  1C89 A;  2LX3 A;  3FRN A;  4IPJ A;  6AME A;  3CM4 A;  3LAZ A;  3G8R A;  2MSJ A;  1EKL A;  1HG7 A;  1B7K A;  4UR4 A;  9MSI A;  1GZI A;  1C8A A;  4AME A;  2LX2 A;  3NLA A;  1KDF A;  5MSI A;  1MSI A;  3QF6 A;  2WQP A;  7AME A;  1OPS A;  1B7I A;  3MSI A;  2SPG A;  4NY6 A; 
#chains in the Genus database with same CATH homology
 8MSI A;  3AME A;  6MSI A;  9AME A;  7MSI A;  1MSJ A;  4UR6 A;  1B7J A;  1JAB A;  2AME A;  2ZDR A;  1AME A;  1KDE A;  1VLI A;  1XUU A;  4MSI A;  1UCS A;  1WVO A;  3RDN A;  1XUZ A;  8AME A;  2MSI A;  2JIA A;  4IPI A;  1C89 A;  2LX3 A;  3FRN A;  4IPJ A;  6AME A;  3CM4 A;  3G8R A;  2MSJ A;  1EKL A;  1HG7 A;  1B7K A;  4UR4 A;  9MSI A;  1GZI A;  1C8A A;  4AME A;  2LX2 A;  3NLA A;  1KDF A;  5MSI A;  1MSI A;  3QF6 A;  2WQP A;  7AME A;  1OPS A;  1B7I A;  3MSI A;  2SPG A;  4NY6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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