7PRNA

E1m, d97a, e99a mutant of rh. blastica porin
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
289
structure length
289
Chain Sequence
b'MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYASAMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
source organism Rhodobacter blasticus
molecule tags Membrane protein
total genus 73
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 7prnA00
1OPFA 2ZLDA 4GCPA 5DL5A 5FVNA 1OSMA 1PHOA 1HXXA 3T24A 3UU2A 5DL6A 3UPGA 1H6S1 3O0EA 2Y0HA 2OMFA 4LSHA 2PRNA 3SYSA 4JFBA 3PORA 3WI4A 1BT9A 6PRNA 3NSGA 3POQA 3VY9X 4LSEA 4FMSA 3VZUX 2ZFGA 3PRNA 3EMNX 1E54A 3VZWX 3SY7A 4D64A 3T20A 4LSFA 4FSOA 3FYXA 2XG6A 3WI5A 1PRNA 4KRAA 3POUA 4FT6A 4D65A 4LSIA 3HWBA 3SYBA 2Y2XA 2XE5A 4FRXA 4RJWA 3SZVA 3SZDA 3A2SX 3HW9A 1MPFA 2FGRA 4GCSA 2FGQX 4FRTA 2K4TA 4D5UA 1GFQA 3JTYA 2Y0LA 3VZTX 1GFPA 3POXA 4KR8A 1GFMA 2QTKA 1BH3A 4FOZA 2XE2A 5JDPA 2XE1A 3K19A 2XE3A 8PRNA 4FSPA 4RJXA 1GFOA 4KR4A 2O4VA 7PRNA 1HXUA 2J4UP 4AUIA 2Y0KA 3SY9A 2PORA 5PRNA 4C69X 1GFNA 2J1NA 5DL8A 5DL7A 2ODJA 3T0SA 4GCQA 3VY8X 1HXTA 4BUMX
chains in the Genus database with same CATH superfamily
1OPFA 2ZLDA 1T1LA 4GCPA 5T5FA 4AYMC 5DL5A 2MNHA 4N74A 2IWWA 5FVNA 1OSMA 1PHOA 1HXXA 3PGSA 4N58A 5AFUL 4FZLA 3T24A 3UU2A 4AYEC 1YS5A 3AAEA 5DL6A 5E79O 4FZNA 3UPGA 1H6S1 3O0EA 4O49A 2Y0HA 2OMFA 4LSHA 2PRNA 2YNKA 3UAQA 3SYSA 5GTIO 3AA7A 1S5LO 4JFBA 3PORA 1QJ8A 4AFKA 2R89A 3WI4A 1BT9A 6PRNA 3NSGA 3POQA 4AZLA 2JMMA 3BRYA 2GE4A 3NJTA 4F4BA 4RL9A 3VY9X 4O3ZA 3PGRA 4LSEA 1ZHWA 4G75A 3LK41 2W80C 4FMSA 4XNLA 2WJQA 3G7GA 5KAFO 3VZUX 4N59A 2ZFGA 3PRNA 4N75A 2R4PA 3AAAA 3EMNX 3AA1B 1E54A 3AA7B 3VZWX 3LK2B 3VE2A 3SY7A 2F1TA 5H2FO 4D64A 5ADXK 3T20A 2XTQA 4LSFA 3DWNA 4FSOA 4RLBA 1P4TA 4CTDA 4E1TA 3FYXA 2X27X 5G38A 5D5DA 2XG6A 3WI5A 1THQA 5GV0A 4FQEA 2LFUA 4O3XB 2WJRA 1PRNA 4KRAA 3LK3A 2AXTO 4PR7A 2R4NA 3GP6A 2KDYA 3POUA 4FT6A 4PUXA 5G39A 5B5EO 4D65A 5AFUK 5KAIO 2F1CX 4LSIA 2R4LA 4AKRA 3HWBA 3VE1A 5GTHO 3PF1A 3SYBA 2Y2XA 2KZ7A 3A0HO 3AAEB 3KZIO 2M07A 4O4UA 2XE5A 4C00A 3QRAA 3DZMA 3KVDD 4FRXA 4PJ0O 3BS0A 4B61A 4RJWA 3V8UA 4FESA 3SZVA 3SZDA 3A2SX 4C4VA 3HW9A 2KXPA 1IZNA 4GHBA 3AA6A 1MPFA 3HOEA 2FGRA 3AA0A 3HOLA 4Z3TA 4GCSA 1ZHYA 4UB6O 4G76A 1ZHXA 1T16A 2FGQX 2K4TA 3QRCA 4FRTA 5B66O 4AYNA 3RBHA 4D5UA 4O4XA 1GFQA 3JTYA 2Y0LA 4U9CA 3AAAB 5G26A 1QJ9A 2WVPA 3VZTX 4AKMA 2ERVA 3C5OA 4C4VB 1GFPA 3POXA 4FUVA 2K0LA 1QJPA 2F1VA 2LHFA 4XNKA 2KC0A 3BRZA 3JCUO 2M06A 4KR8A 4FZMA 1GFMA 2QTKA 1BH3A 4FOZA 2XE2A 3A0BO 3DWOX 1ORMA 2XE1A 3K19A 4JCHA 4K3CA 4O3WA 5JDPA 2R8AA 2XE3A 4GF4A 2XMXA 3DA4A 2Y7SA 8PRNA 4QQ1A 3LK42 1G90A 4UB8O 1MM4A 4FSPA 3LK3B 2XTRA 4O3YA 4RJXA 1GFOA 2W81C 2N2MA 2JQYA 4KR4A 4AKRB 4IL6O 5IYUA 3AA1A 2O4VA 5G3AA 7PRNA 2KZ7B 3LK2A 1HXUA 5TISO 1Q9FA 4RLCA 3PGUA 2J4UP 2MHLA 2R88A 2R4OA 2Y0KA 4K3BA 3SY9A 3TZGA 2X9KA 4AUIA 2PORA 5PRNA 4E1SA 5ADXL 1MM5A 4C69X 1GFNA 2J1NA 3DA3A 5DL8A 5DL7A 1ZHZA 2ODJA 3T0SA 3PQUA 2IWVA 1IZNB 2KXPB 3AA6B 5EE2A 3PQSA 4AYDC 1Q9GA 4GCQA 3VY8X 2YPVA 1BXWA 2N2LA 3WU2O 1HXTA 3AA0B 1ZHTA 4AYID 4BUMX
chains in the Genus database with same CATH topology
1OPFA 2ZLDA 4GCPA 5T5FA 4AYMC 5DL5A 2MNHA 5FVNA 1OSMA 1PHOA 1HXXA 4N58A 5AFUL 4FZLA 3T24A 3UU2A 4AYEC 1YS5A 3AAEA 5DL6A 3UPGA 4FZNA 1H6S1 3O0EA 4O49A 2Y0HA 2OMFA 4LSHA 2PRNA 2YNKA 3UAQA 3SYSA 3AA7A 4JFBA 3PORA 1QJ8A 4AFKA 3WI4A 1BT9A 6PRNA 3NSGA 3POQA 4AZLA 2JMMA 2GE4A 4F4BA 4RL9A 3VY9X 4O3ZA 4LSEA 1ZHWA 4G75A 3LK41 2W80C 4FMSA 4XNLA 3VZUX 3G7GA 4N59A 2ZFGA 3PRNA 3AAAA 3EMNX 3AA1B 1E54A 3AA7B 3VZWX 3LK2B 3VE2A 3SY7A 2F1TA 4D64A 5ADXK 3T20A 2XTQA 4LSFA 4FSOA 4RLBA 1P4TA 4E1TA 3FYXA 2X27X 5D5DA 2XG6A 3WI5A 1THQA 5GV0A 2LFUA 4O3XB 1PRNA 4KRAA 3LK3A 3GP6A 3POUA 2KDYA 4FT6A 4PUXA 4D65A 5AFUK 4LSIA 4AKRA 3HWBA 3VE1A 3SYBA 2Y2XA 2KZ7A 3AAEB 2M07A 4O4UA 2XE5A 3QRAA 3KVDD 4FRXA 4B61A 4RJWA 3V8UA 4FESA 3SZVA 3SZDA 3A2SX 3HW9A 2KXPA 1IZNA 4GHBA 3AA6A 1MPFA 3HOEA 2FGRA 3AA0A 3HOLA 4Z3TA 4GCSA 1ZHYA 4G76A 1ZHXA 2FGQX 3QRCA 2K4TA 4FRTA 4AYNA 3RBHA 4D5UA 4O4XA 1GFQA 3JTYA 2Y0LA 4U9CA 3AAAB 5G26A 1QJ9A 3VZTX 4AKMA 2ERVA 3C5OA 1GFPA 3POXA 4FUVA 2K0LA 1QJPA 2F1VA 2LHFA 4XNKA 2KC0A 2M06A 4KR8A 4FZMA 1GFMA 2QTKA 1BH3A 4FOZA 2XE2A 4JCHA 5JDPA 1ORMA 2XE1A 3K19A 4O3WA 2XE3A 4GF4A 2XMXA 3DA4A 2Y7SA 8PRNA 4QQ1A 3LK42 1G90A 1MM4A 4FSPA 3LK3B 2XTRA 4O3YA 4RJXA 1GFOA 2W81C 2N2MA 4KR4A 4AKRB 5IYUA 3AA1A 2O4VA 7PRNA 2KZ7B 3LK2A 1HXUA 1Q9FA 4RLCA 2J4UP 2MHLA 3TZGA 2Y0KA 3SY9A 4AUIA 4E1SA 2PORA 5PRNA 5ADXL 1MM5A 4C69X 1GFNA 2J1NA 3DA3A 5DL8A 5DL7A 1ZHZA 2ODJA 3T0SA 3PQUA 2KXPB 1IZNB 4AYDC 3AA6B 5EE2A 3PQSA 1Q9GA 4GCQA 3VY8X 2YPVA 1BXWA 2N2LA 4AYID 1HXTA 3AA0B 1ZHTA 4BUMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OPF A;  2ZLD A;  4GCP A;  5DL5 A;  5FVN A;  1OSM A;  1PHO A;  1HXX A;  3T24 A;  3UU2 A;  5DL6 A;  3UPG A;  1H6S 1;  3O0E A;  2Y0H A;  2OMF A;  4LSH A;  2PRN A;  3SYS A;  4JFB A;  3POR A;  3WI4 A;  1BT9 A;  6PRN A;  3NSG A;  3POQ A;  3VY9 X;  4LSE A;  4FMS A;  3VZU X;  2ZFG A;  3PRN A;  3EMN X;  1E54 A;  3VZW X;  3SY7 A;  4D64 A;  3T20 A;  4LSF A;  4FSO A;  3FYX A;  2XG6 A;  3WI5 A;  1PRN A;  4KRA A;  3POU A;  4FT6 A;  4D65 A;  4LSI A;  3HWB A;  3SYB A;  2Y2X A;  2XE5 A;  4FRX A;  4RJW A;  3SZV A;  3SZD A;  3A2S X;  3HW9 A;  1MPF A;  2FGR A;  4GCS A;  2FGQ X;  4FRT A;  2K4T A;  4D5U A;  1GFQ A;  3JTY A;  2Y0L A;  3VZT X;  1GFP A;  3POX A;  4KR8 A;  1GFM A;  2QTK A;  1BH3 A;  4FOZ A;  2XE2 A;  5JDP A;  2XE1 A;  3K19 A;  2XE3 A;  8PRN A;  4FSP A;  4RJX A;  1GFO A;  4KR4 A;  2O4V A;  7PRN A;  1HXU A;  2J4U P;  4AUI A;  2Y0K A;  3SY9 A;  2POR A;  5PRN A;  4C69 X;  1GFN A;  2J1N A;  5DL8 A;  5DL7 A;  2ODJ A;  3T0S A;  4GCQ A;  3VY8 X;  1HXT A;  4BUM X; 
#chains in the Genus database with same CATH topology
 1OPF A;  2ZLD A;  1T1L A;  4GCP A;  5T5F A;  4AYM C;  5DL5 A;  2MNH A;  4N74 A;  2IWW A;  5FVN A;  1OSM A;  1PHO A;  1HXX A;  3PGS A;  4N58 A;  5AFU L;  4FZL A;  3T24 A;  3UU2 A;  4AYE C;  1YS5 A;  3AAE A;  5DL6 A;  5E79 O;  4FZN A;  3UPG A;  1H6S 1;  3O0E A;  4O49 A;  2Y0H A;  2OMF A;  4LSH A;  2PRN A;  2YNK A;  3UAQ A;  3SYS A;  5GTI O;  3AA7 A;  1S5L O;  4JFB A;  3POR A;  1QJ8 A;  4AFK A;  2R89 A;  3WI4 A;  1BT9 A;  6PRN A;  3NSG A;  3POQ A;  4AZL A;  2JMM A;  3BRY A;  2GE4 A;  3NJT A;  4F4B A;  4RL9 A;  3VY9 X;  4O3Z A;  3PGR A;  4LSE A;  1ZHW A;  4G75 A;  3LK4 1;  2W80 C;  4FMS A;  4XNL A;  2WJQ A;  3G7G A;  5KAF O;  3VZU X;  4N59 A;  2ZFG A;  3PRN A;  4N75 A;  2R4P A;  3AAA A;  3EMN X;  3AA1 B;  1E54 A;  3AA7 B;  3VZW X;  3LK2 B;  3VE2 A;  3SY7 A;  2F1T A;  5H2F O;  4D64 A;  5ADX K;  3T20 A;  2XTQ A;  4LSF A;  3DWN A;  4FSO A;  4RLB A;  1P4T A;  4CTD A;  4E1T A;  3FYX A;  2X27 X;  5G38 A;  5D5D A;  2XG6 A;  3WI5 A;  1THQ A;  5GV0 A;  4FQE A;  2LFU A;  4O3X B;  2WJR A;  1PRN A;  4KRA A;  3LK3 A;  2AXT O;  4PR7 A;  2R4N A;  3GP6 A;  2KDY A;  3POU A;  4FT6 A;  4PUX A;  5G39 A;  5B5E O;  4D65 A;  5AFU K;  5KAI O;  2F1C X;  4LSI A;  2R4L A;  4AKR A;  3HWB A;  3VE1 A;  5GTH O;  3PF1 A;  3SYB A;  2Y2X A;  2KZ7 A;  3A0H O;  3AAE B;  3KZI O;  2M07 A;  4O4U A;  2XE5 A;  4C00 A;  3QRA A;  3DZM A;  3KVD D;  4FRX A;  4PJ0 O;  3BS0 A;  4B61 A;  4RJW A;  3V8U A;  4FES A;  3SZV A;  3SZD A;  3A2S X;  4C4V A;  3HW9 A;  2KXP A;  1IZN A;  4GHB A;  3AA6 A;  1MPF A;  3HOE A;  2FGR A;  3AA0 A;  3HOL A;  4Z3T A;  4GCS A;  1ZHY A;  4UB6 O;  4G76 A;  1ZHX A;  1T16 A;  2FGQ X;  2K4T A;  3QRC A;  4FRT A;  5B66 O;  4AYN A;  3RBH A;  4D5U A;  4O4X A;  1GFQ A;  3JTY A;  2Y0L A;  4U9C A;  3AAA B;  5G26 A;  1QJ9 A;  2WVP A;  3VZT X;  4AKM A;  2ERV A;  3C5O A;  4C4V B;  1GFP A;  3POX A;  4FUV A;  2K0L A;  1QJP A;  2F1V A;  2LHF A;  4XNK A;  2KC0 A;  3BRZ A;  3JCU O;  2M06 A;  4KR8 A;  4FZM A;  1GFM A;  2QTK A;  1BH3 A;  4FOZ A;  2XE2 A;  3A0B O;  3DWO X;  1ORM A;  2XE1 A;  3K19 A;  4JCH A;  4K3C A;  4O3W A;  5JDP A;  2R8A A;  2XE3 A;  4GF4 A;  2XMX A;  3DA4 A;  2Y7S A;  8PRN A;  4QQ1 A;  3LK4 2;  1G90 A;  4UB8 O;  1MM4 A;  4FSP A;  3LK3 B;  2XTR A;  4O3Y A;  4RJX A;  1GFO A;  2W81 C;  2N2M A;  2JQY A;  4KR4 A;  4AKR B;  4IL6 O;  5IYU A;  3AA1 A;  2O4V A;  5G3A A;  7PRN A;  2KZ7 B;  3LK2 A;  1HXU A;  5TIS O;  1Q9F A;  4RLC A;  3PGU A;  2J4U P;  2MHL A;  2R88 A;  2R4O A;  2Y0K A;  4K3B A;  3SY9 A;  3TZG A;  2X9K A;  4AUI A;  2POR A;  5PRN A;  4E1S A;  5ADX L;  1MM5 A;  4C69 X;  1GFN A;  2J1N A;  3DA3 A;  5DL8 A;  5DL7 A;  1ZHZ A;  2ODJ A;  3T0S A;  3PQU A;  2IWV A;  1IZN B;  2KXP B;  3AA6 B;  5EE2 A;  3PQS A;  4AYD C;  1Q9G A;  4GCQ A;  3VY8 X;  2YPV A;  1BXW A;  2N2L A;  3WU2 O;  1HXT A;  3AA0 B;  1ZHT A;  4AYI D;  4BUM X; 
#chains in the Genus database with same CATH homology
 1OPF A;  2ZLD A;  4GCP A;  5T5F A;  4AYM C;  5DL5 A;  2MNH A;  5FVN A;  1OSM A;  1PHO A;  1HXX A;  4N58 A;  5AFU L;  4FZL A;  3T24 A;  3UU2 A;  4AYE C;  1YS5 A;  3AAE A;  5DL6 A;  3UPG A;  4FZN A;  1H6S 1;  3O0E A;  4O49 A;  2Y0H A;  2OMF A;  4LSH A;  2PRN A;  2YNK A;  3UAQ A;  3SYS A;  3AA7 A;  4JFB A;  3POR A;  1QJ8 A;  4AFK A;  3WI4 A;  1BT9 A;  6PRN A;  3NSG A;  3POQ A;  4AZL A;  2JMM A;  2GE4 A;  4F4B A;  4RL9 A;  3VY9 X;  4O3Z A;  4LSE A;  1ZHW A;  4G75 A;  3LK4 1;  2W80 C;  4FMS A;  4XNL A;  3VZU X;  3G7G A;  4N59 A;  2ZFG A;  3PRN A;  3AAA A;  3EMN X;  3AA1 B;  1E54 A;  3AA7 B;  3VZW X;  3LK2 B;  3VE2 A;  3SY7 A;  2F1T A;  4D64 A;  5ADX K;  3T20 A;  2XTQ A;  4LSF A;  4FSO A;  4RLB A;  1P4T A;  4E1T A;  3FYX A;  2X27 X;  5D5D A;  2XG6 A;  3WI5 A;  1THQ A;  5GV0 A;  2LFU A;  4O3X B;  1PRN A;  4KRA A;  3LK3 A;  3GP6 A;  3POU A;  2KDY A;  4FT6 A;  4PUX A;  4D65 A;  5AFU K;  4LSI A;  4AKR A;  3HWB A;  3VE1 A;  3SYB A;  2Y2X A;  2KZ7 A;  3AAE B;  2M07 A;  4O4U A;  2XE5 A;  3QRA A;  3KVD D;  4FRX A;  4B61 A;  4RJW A;  3V8U A;  4FES A;  3SZV A;  3SZD A;  3A2S X;  3HW9 A;  2KXP A;  1IZN A;  4GHB A;  3AA6 A;  1MPF A;  3HOE A;  2FGR A;  3AA0 A;  3HOL A;  4Z3T A;  4GCS A;  1ZHY A;  4G76 A;  1ZHX A;  2FGQ X;  3QRC A;  2K4T A;  4FRT A;  4AYN A;  3RBH A;  4D5U A;  4O4X A;  1GFQ A;  3JTY A;  2Y0L A;  4U9C A;  3AAA B;  5G26 A;  1QJ9 A;  3VZT X;  4AKM A;  2ERV A;  3C5O A;  1GFP A;  3POX A;  4FUV A;  2K0L A;  1QJP A;  2F1V A;  2LHF A;  4XNK A;  2KC0 A;  2M06 A;  4KR8 A;  4FZM A;  1GFM A;  2QTK A;  1BH3 A;  4FOZ A;  2XE2 A;  4JCH A;  5JDP A;  1ORM A;  2XE1 A;  3K19 A;  4O3W A;  2XE3 A;  4GF4 A;  2XMX A;  3DA4 A;  2Y7S A;  8PRN A;  4QQ1 A;  3LK4 2;  1G90 A;  1MM4 A;  4FSP A;  3LK3 B;  2XTR A;  4O3Y A;  4RJX A;  1GFO A;  2W81 C;  2N2M A;  4KR4 A;  4AKR B;  5IYU A;  3AA1 A;  2O4V A;  7PRN A;  2KZ7 B;  3LK2 A;  1HXU A;  1Q9F A;  4RLC A;  2J4U P;  2MHL A;  3TZG A;  2Y0K A;  3SY9 A;  4AUI A;  4E1S A;  2POR A;  5PRN A;  5ADX L;  1MM5 A;  4C69 X;  1GFN A;  2J1N A;  3DA3 A;  5DL8 A;  5DL7 A;  1ZHZ A;  2ODJ A;  3T0S A;  3PQU A;  2KXP B;  1IZN B;  4AYD C;  3AA6 B;  5EE2 A;  3PQS A;  1Q9G A;  4GCQ A;  3VY8 X;  2YPV A;  1BXW A;  2N2L A;  4AYI D;  1HXT A;  3AA0 B;  1ZHT A;  4BUM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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