7PRNA

E1m, d97a, e99a mutant of rh. blastica porin
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYASAMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Rhodobacter blasticus
publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
total genus 73
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 7prnA00
3FYXA 3UPGA 1PHOA 1HXTA 1H6S1 1GFNA 4LSIA 2XG6A 3T24A 1GFMA 4FMSA 2ODJA 5JDPA 1HXUA 2QTKA 4LSHA 4GCQA 2Y0KA 2ZLDA 4FT6A 4FRXA 1GFOA 1HXXA 4D64A 3VY8X 4RJXA 3SYSA 4D5UA 5DL6A 3K19A 4C69X 2K4TA 4RJWA 3SY7A 4JFBA 3PRNA 1PRNA 4BUMX 3NSGA 2XE2A 3HW9A 4FOZA 2FGQX 3EMNX 2ZFGA 2FGRA 2Y0LA 3POXA 4KR8A 1BH3A 4LSEA 3VZTX 4FSOA 1GFQA 2OMFA 3POUA 3WI5A 3O0EA 4FSPA 5PRNA 1BT9A 4GCPA 3JTYA 2O4VA 2PRNA 3SZVA 3T0SA 3UU2A 1MPFA 6PRNA 2XE1A 8PRNA 3PORA 5FVNA 3POQA 2J4UP 2PORA 3HWBA 5DL5A 3SYBA 1E54A 2J1NA 4D65A 3A2SX 3WI4A 7PRNA 3VZWX 4AUIA 2XE5A 4FRTA 3VZUX 1OPFA 1GFPA 3SZDA 4GCSA 2Y0HA 4KR4A 3VY9X 2XE3A 4LSFA 4KRAA 5DL7A 5DL8A 2Y2XA 3SY9A 1OSMA 3T20A
chains in the Genus database with same CATH superfamily
3FYXA 3UPGA 2KZ7A 2R89A 1PHOA 4GF4A 3LK2B 3LK41 4FESA 4PR7A 1HXTA 5KAIO 1H6S1 1GFNA 3KZIO 2XG6A 4LSIA 4N75A 4AYDC 4AKRB 3T24A 3PQSA 2R4LA 3DWOX 1GFMA 3AAEA 4FMSA 2JMMA 3BRZA 4PUXA 3G7GA 4G76A 5TISO 2KC0A 2ODJA 2K0LA 4O3WA 5JDPA 1HXUA 2QTKA 4K3CA 4LSHA 4QQ1A 4AYMC 4GCQA 5G26A 5G3AA 2Y0KA 1ZHXA 4JCHA 2GE4A 2ZLDA 4F4BA 4FT6A 4O3ZA 4FRXA 1THQA 2IWVA 2R8AA 1GFOA 2XTRA 2M07A 4GHBA 3TZGA 4RL9A 2WJRA 3AA6A 2M06A 4FZMA 1S5LO 1HXXA 1ZHZA 2YNKA 3DZMA 4O4XA 4D64A 3AA0B 3BS0A 1T16A 3VY8X 4RJXA 3SYSA 3UAQA 3AA7A 5DL6A 4D5UA 1Q9GA 2AXTO 3K19A 4AKMA 2K4TA 3DA3A 4C69X 4Z3TA 4O49A 4O3YA 4FZLA 4O3XB 4RJWA 5GTIO 4AYNA 2LHFA 4N59A 3SY7A 2W81C 4JFBA 3PRNA 1BXWA 1IZNB 1PRNA 3NSGA 1ZHTA 4BUMX 2XE2A 5KAFO 1ZHYA 3VE1A 5B66O 3HW9A 1ZHWA 4FOZA 2FGQX 3KVDD 4AFKA 3PGUA 1YS5A 3EMNX 2ZFGA 3LK2A 4RLBA 2FGRA 4CTDA 2Y0LA 2WJQA 3POXA 2R4NA 4KR8A 1BH3A 4UB6O 4C4VA 4LSEA 2W80C 2JQYA 3LK3B 3PGRA 4FSOA 3VZTX 4AKRA 1GFQA 2OMFA 2XMXA 2KXPB 2X27X 3POUA 5E79O 3HOLA 3WI5A 2N2LA 3O0EA 4E1SA 4FSPA 2MNHA 5AFUK 5PRNA 1BT9A 3QRCA 4GCPA 4AYID 2F1TA 4G75A 3A0HO 3JTYA 4N74A 2O4VA 4AZLA 2PRNA 3SZVA 3AA1B 3T0SA 1MPFA 3UU2A 5AFUL 6PRNA 2XE1A 8PRNA 3A0BO 1P4TA 3PF1A 3PORA 3AAAB 3PGSA 5FVNA 3POQA 1G90A 1QJ9A 3DWNA 4C4VB 2PORA 4FZNA 4AYEC 2ERVA 2J4UP 3AA0A 5T5FA 2KZ7B 2N2MA 4FUVA 2X9KA 3HWBA 3QRAA 4FQEA 3VE2A 5GV0A 4B61A 5DL5A 2R4OA 4N58A 2R88A 3JCUO 3SYBA 1T1LA 2KDYA 5ADXK 5B5EO 5GTHO 5H2FO 1E54A 2J1NA 5G38A 4D65A 5G39A 3A2SX 3AAEB 3GP6A 3RBHA 1IZNA 2F1VA 3C5OA 3WI4A 7PRNA 5IYUA 3T20A 2Y7SA 2LFUA 3LK42 1MM4A 5ADXL 3VZWX 3HOEA 3V8UA 4AUIA 2XE5A 2MHLA 4FRTA 4O4UA 3VZUX 1OPFA 3WU2O 2R4PA 4U9CA 3DA4A 3AA6B 3LK3A 1GFPA 2KXPA 3SZDA 4K3BA 3NJTA 1QJPA 1MM5A 2Y0HA 4GCSA 4KR4A 4RLCA 4UB8O 1Q9FA 2F1CX 3AA7B 4XNLA 5EE2A 2XTQA 3VY9X 2XE3A 4LSFA 4KRAA 3PQUA 5DL7A 4XNKA 2YPVA 3AA1A 4PJ0O 4C00A 1ORMA 5DL8A 4IL6O 4E1TA 2IWWA 3AAAA 1QJ8A 2Y2XA 3SY9A 2WVPA 1OSMA 3BRYA 5D5DA
chains in the Genus database with same CATH topology
3FYXA 3UPGA 2KZ7A 1PHOA 4GF4A 3LK2B 3LK41 4FESA 1HXTA 1H6S1 1GFNA 4LSIA 2XG6A 4AYDC 4AKRB 3T24A 3PQSA 1GFMA 3AAEA 4FMSA 2JMMA 4PUXA 3G7GA 4G76A 2KC0A 2ODJA 2K0LA 4O3WA 5JDPA 1HXUA 2QTKA 4LSHA 4QQ1A 4GCQA 5G26A 2Y0KA 1ZHXA 4JCHA 2GE4A 2ZLDA 4F4BA 4FT6A 4O3ZA 4FRXA 1THQA 2XTRA 1GFOA 2M07A 4GHBA 3TZGA 4RL9A 3AA6A 4FZMA 2M06A 1HXXA 1ZHZA 2YNKA 4O4XA 4D64A 3AA0B 3VY8X 4RJXA 3SYSA 3UAQA 3AA7A 5DL6A 4D5UA 1Q9GA 4AKMA 3K19A 4C69X 2K4TA 3DA3A 4Z3TA 4O49A 4O3YA 4FZLA 4O3XB 4RJWA 4AYNA 2LHFA 4N59A 3SY7A 2W81C 4JFBA 3PRNA 1BXWA 1IZNB 1PRNA 3NSGA 1ZHTA 4BUMX 2XE2A 1ZHYA 3VE1A 3HW9A 1ZHWA 4FOZA 2FGQX 3KVDD 4AFKA 1YS5A 3EMNX 2ZFGA 3LK2A 4RLBA 2FGRA 2Y0LA 3POXA 4KR8A 1BH3A 4LSEA 2W80C 3VZTX 3LK3B 4FSOA 4AKRA 1GFQA 2OMFA 2XMXA 2KXPB 2X27X 3POUA 4AZLA 3HOLA 3WI5A 2N2LA 3O0EA 4E1SA 4FSPA 2MNHA 5AFUK 5PRNA 1BT9A 3QRCA 4GCPA 4AYID 2F1TA 4G75A 3JTYA 2O4VA 2PRNA 3SZVA 3AA1B 3T0SA 1MPFA 3UU2A 5AFUL 6PRNA 2XE1A 8PRNA 3PORA 1P4TA 5FVNA 1G90A 3AAAB 3POQA 1QJ9A 2J4UP 2PORA 4FZNA 4AYEC 2ERVA 3AA0A 5T5FA 2KZ7B 2N2MA 4FUVA 5GV0A 3HWBA 3QRAA 3VE2A 4B61A 5DL5A 4N58A 3SYBA 2KDYA 5ADXK 1E54A 2J1NA 4D65A 3A2SX 3AAEB 3GP6A 3RBHA 1IZNA 2F1VA 3C5OA 3WI4A 7PRNA 5IYUA 3T20A 2Y7SA 2LFUA 3LK42 1MM4A 5ADXL 3VZWX 3HOEA 3V8UA 4AUIA 2XE5A 2MHLA 4FRTA 4O4UA 3VZUX 1OPFA 4U9CA 3DA4A 3AA6B 3LK3A 1GFPA 2KXPA 3SZDA 1QJPA 1MM5A 2Y0HA 4GCSA 4KR4A 4RLCA 4XNLA 1Q9FA 3AA7B 4AYMC 5EE2A 2XTQA 3VY9X 2XE3A 4LSFA 4KRAA 3PQUA 5DL7A 4XNKA 2YPVA 3AA1A 1ORMA 5DL8A 4E1TA 3AAAA 1QJ8A 2Y2XA 3SY9A 1OSMA 5D5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FYX A;  3UPG A;  1PHO A;  1HXT A;  1H6S 1;  1GFN A;  4LSI A;  2XG6 A;  3T24 A;  1GFM A;  4FMS A;  2ODJ A;  5JDP A;  1HXU A;  2QTK A;  4LSH A;  4GCQ A;  2Y0K A;  2ZLD A;  4FT6 A;  4FRX A;  1GFO A;  1HXX A;  4D64 A;  3VY8 X;  4RJX A;  3SYS A;  4D5U A;  5DL6 A;  3K19 A;  4C69 X;  2K4T A;  4RJW A;  3SY7 A;  4JFB A;  3PRN A;  1PRN A;  4BUM X;  3NSG A;  2XE2 A;  3HW9 A;  4FOZ A;  2FGQ X;  3EMN X;  2ZFG A;  2FGR A;  2Y0L A;  3POX A;  4KR8 A;  1BH3 A;  4LSE A;  3VZT X;  4FSO A;  1GFQ A;  2OMF A;  3POU A;  3WI5 A;  3O0E A;  4FSP A;  5PRN A;  1BT9 A;  4GCP A;  3JTY A;  2O4V A;  2PRN A;  3SZV A;  3T0S A;  3UU2 A;  1MPF A;  6PRN A;  2XE1 A;  8PRN A;  3POR A;  5FVN A;  3POQ A;  2J4U P;  2POR A;  3HWB A;  5DL5 A;  3SYB A;  1E54 A;  2J1N A;  4D65 A;  3A2S X;  3WI4 A;  7PRN A;  3VZW X;  4AUI A;  2XE5 A;  4FRT A;  3VZU X;  1OPF A;  1GFP A;  3SZD A;  4GCS A;  2Y0H A;  4KR4 A;  3VY9 X;  2XE3 A;  4LSF A;  4KRA A;  5DL7 A;  5DL8 A;  2Y2X A;  3SY9 A;  1OSM A;  3T20 A; 
#chains in the Genus database with same CATH topology
 3FYX A;  3UPG A;  2KZ7 A;  2R89 A;  1PHO A;  4GF4 A;  3LK2 B;  3LK4 1;  4FES A;  4PR7 A;  1HXT A;  5KAI O;  1H6S 1;  1GFN A;  3KZI O;  2XG6 A;  4LSI A;  4N75 A;  4AYD C;  4AKR B;  3T24 A;  3PQS A;  2R4L A;  3DWO X;  1GFM A;  3AAE A;  4FMS A;  2JMM A;  3BRZ A;  4PUX A;  3G7G A;  4G76 A;  5TIS O;  2KC0 A;  2ODJ A;  2K0L A;  4O3W A;  5JDP A;  1HXU A;  2QTK A;  4K3C A;  4LSH A;  4QQ1 A;  4AYM C;  4GCQ A;  5G26 A;  5G3A A;  2Y0K A;  1ZHX A;  4JCH A;  2GE4 A;  2ZLD A;  4F4B A;  4FT6 A;  4O3Z A;  4FRX A;  1THQ A;  2IWV A;  2R8A A;  1GFO A;  2XTR A;  2M07 A;  4GHB A;  3TZG A;  4RL9 A;  2WJR A;  3AA6 A;  2M06 A;  4FZM A;  1S5L O;  1HXX A;  1ZHZ A;  2YNK A;  3DZM A;  4O4X A;  4D64 A;  3AA0 B;  3BS0 A;  1T16 A;  3VY8 X;  4RJX A;  3SYS A;  3UAQ A;  3AA7 A;  5DL6 A;  4D5U A;  1Q9G A;  2AXT O;  3K19 A;  4AKM A;  2K4T A;  3DA3 A;  4C69 X;  4Z3T A;  4O49 A;  4O3Y A;  4FZL A;  4O3X B;  4RJW A;  5GTI O;  4AYN A;  2LHF A;  4N59 A;  3SY7 A;  2W81 C;  4JFB A;  3PRN A;  1BXW A;  1IZN B;  1PRN A;  3NSG A;  1ZHT A;  4BUM X;  2XE2 A;  5KAF O;  1ZHY A;  3VE1 A;  5B66 O;  3HW9 A;  1ZHW A;  4FOZ A;  2FGQ X;  3KVD D;  4AFK A;  3PGU A;  1YS5 A;  3EMN X;  2ZFG A;  3LK2 A;  4RLB A;  2FGR A;  4CTD A;  2Y0L A;  2WJQ A;  3POX A;  2R4N A;  4KR8 A;  1BH3 A;  4UB6 O;  4C4V A;  4LSE A;  2W80 C;  2JQY A;  3LK3 B;  3PGR A;  4FSO A;  3VZT X;  4AKR A;  1GFQ A;  2OMF A;  2XMX A;  2KXP B;  2X27 X;  3POU A;  5E79 O;  3HOL A;  3WI5 A;  2N2L A;  3O0E A;  4E1S A;  4FSP A;  2MNH A;  5AFU K;  5PRN A;  1BT9 A;  3QRC A;  4GCP A;  4AYI D;  2F1T A;  4G75 A;  3A0H O;  3JTY A;  4N74 A;  2O4V A;  4AZL A;  2PRN A;  3SZV A;  3AA1 B;  3T0S A;  1MPF A;  3UU2 A;  5AFU L;  6PRN A;  2XE1 A;  8PRN A;  3A0B O;  1P4T A;  3PF1 A;  3POR A;  3AAA B;  3PGS A;  5FVN A;  3POQ A;  1G90 A;  1QJ9 A;  3DWN A;  4C4V B;  2POR A;  4FZN A;  4AYE C;  2ERV A;  2J4U P;  3AA0 A;  5T5F A;  2KZ7 B;  2N2M A;  4FUV A;  2X9K A;  3HWB A;  3QRA A;  4FQE A;  3VE2 A;  5GV0 A;  4B61 A;  5DL5 A;  2R4O A;  4N58 A;  2R88 A;  3JCU O;  3SYB A;  1T1L A;  2KDY A;  5ADX K;  5B5E O;  5GTH O;  5H2F O;  1E54 A;  2J1N A;  5G38 A;  4D65 A;  5G39 A;  3A2S X;  3AAE B;  3GP6 A;  3RBH A;  1IZN A;  2F1V A;  3C5O A;  3WI4 A;  7PRN A;  5IYU A;  3T20 A;  2Y7S A;  2LFU A;  3LK4 2;  1MM4 A;  5ADX L;  3VZW X;  3HOE A;  3V8U A;  4AUI A;  2XE5 A;  2MHL A;  4FRT A;  4O4U A;  3VZU X;  1OPF A;  3WU2 O;  2R4P A;  4U9C A;  3DA4 A;  3AA6 B;  3LK3 A;  1GFP A;  2KXP A;  3SZD A;  4K3B A;  3NJT A;  1QJP A;  1MM5 A;  2Y0H A;  4GCS A;  4KR4 A;  4RLC A;  4UB8 O;  1Q9F A;  2F1C X;  3AA7 B;  4XNL A;  5EE2 A;  2XTQ A;  3VY9 X;  2XE3 A;  4LSF A;  4KRA A;  3PQU A;  5DL7 A;  4XNK A;  2YPV A;  3AA1 A;  4PJ0 O;  4C00 A;  1ORM A;  5DL8 A;  4IL6 O;  4E1T A;  2IWW A;  3AAA A;  1QJ8 A;  2Y2X A;  3SY9 A;  2WVP A;  1OSM A;  3BRY A;  5D5D A; 
#chains in the Genus database with same CATH homology
 3FYX A;  3UPG A;  2KZ7 A;  1PHO A;  4GF4 A;  3LK2 B;  3LK4 1;  4FES A;  1HXT A;  1H6S 1;  1GFN A;  4LSI A;  2XG6 A;  4AYD C;  4AKR B;  3T24 A;  3PQS A;  1GFM A;  3AAE A;  4FMS A;  2JMM A;  4PUX A;  3G7G A;  4G76 A;  2KC0 A;  2ODJ A;  2K0L A;  4O3W A;  5JDP A;  1HXU A;  2QTK A;  4LSH A;  4QQ1 A;  4GCQ A;  5G26 A;  2Y0K A;  1ZHX A;  4JCH A;  2GE4 A;  2ZLD A;  4F4B A;  4FT6 A;  4O3Z A;  4FRX A;  1THQ A;  2XTR A;  1GFO A;  2M07 A;  4GHB A;  3TZG A;  4RL9 A;  3AA6 A;  4FZM A;  2M06 A;  1HXX A;  1ZHZ A;  2YNK A;  4O4X A;  4D64 A;  3AA0 B;  3VY8 X;  4RJX A;  3SYS A;  3UAQ A;  3AA7 A;  5DL6 A;  4D5U A;  1Q9G A;  4AKM A;  3K19 A;  4C69 X;  2K4T A;  3DA3 A;  4Z3T A;  4O49 A;  4O3Y A;  4FZL A;  4O3X B;  4RJW A;  4AYN A;  2LHF A;  4N59 A;  3SY7 A;  2W81 C;  4JFB A;  3PRN A;  1BXW A;  1IZN B;  1PRN A;  3NSG A;  1ZHT A;  4BUM X;  2XE2 A;  1ZHY A;  3VE1 A;  3HW9 A;  1ZHW A;  4FOZ A;  2FGQ X;  3KVD D;  4AFK A;  1YS5 A;  3EMN X;  2ZFG A;  3LK2 A;  4RLB A;  2FGR A;  2Y0L A;  3POX A;  4KR8 A;  1BH3 A;  4LSE A;  2W80 C;  3VZT X;  3LK3 B;  4FSO A;  4AKR A;  1GFQ A;  2OMF A;  2XMX A;  2KXP B;  2X27 X;  3POU A;  4AZL A;  3HOL A;  3WI5 A;  2N2L A;  3O0E A;  4E1S A;  4FSP A;  2MNH A;  5AFU K;  5PRN A;  1BT9 A;  3QRC A;  4GCP A;  4AYI D;  2F1T A;  4G75 A;  3JTY A;  2O4V A;  2PRN A;  3SZV A;  3AA1 B;  3T0S A;  1MPF A;  3UU2 A;  5AFU L;  6PRN A;  2XE1 A;  8PRN A;  3POR A;  1P4T A;  5FVN A;  1G90 A;  3AAA B;  3POQ A;  1QJ9 A;  2J4U P;  2POR A;  4FZN A;  4AYE C;  2ERV A;  3AA0 A;  5T5F A;  2KZ7 B;  2N2M A;  4FUV A;  5GV0 A;  3HWB A;  3QRA A;  3VE2 A;  4B61 A;  5DL5 A;  4N58 A;  3SYB A;  2KDY A;  5ADX K;  1E54 A;  2J1N A;  4D65 A;  3A2S X;  3AAE B;  3GP6 A;  3RBH A;  1IZN A;  2F1V A;  3C5O A;  3WI4 A;  7PRN A;  5IYU A;  3T20 A;  2Y7S A;  2LFU A;  3LK4 2;  1MM4 A;  5ADX L;  3VZW X;  3HOE A;  3V8U A;  4AUI A;  2XE5 A;  2MHL A;  4FRT A;  4O4U A;  3VZU X;  1OPF A;  4U9C A;  3DA4 A;  3AA6 B;  3LK3 A;  1GFP A;  2KXP A;  3SZD A;  1QJP A;  1MM5 A;  2Y0H A;  4GCS A;  4KR4 A;  4RLC A;  4XNL A;  1Q9F A;  3AA7 B;  4AYM C;  5EE2 A;  2XTQ A;  3VY9 X;  2XE3 A;  4LSF A;  4KRA A;  3PQU A;  5DL7 A;  4XNK A;  2YPV A;  3AA1 A;  1ORM A;  5DL8 A;  4E1T A;  3AAA A;  1QJ8 A;  2Y2X A;  3SY9 A;  1OSM A;  5D5D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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