7A9XA

Structure of yeast rmd9p in complex with 16nt target rna
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
560
structure length
510
Chain Sequence
ASPWRHELLSFDEVSSALKYSTTPKNPSFAMFWDSMGRAMELYYSLRESPDFNAYRVSRLIHLLHNGLRSTRDQLVKLSRKPDYDSQSFHKEMMNFLNSLKDISDDILIGKVSVSGYGATHLLTSFKELSFDDDCIRIWEASKNLSDETTSQAFQEPKVVGFMLPLLYAKTRSLTEPNELYNQIIQSKEFIHPNLYSGLIKVFIKAEDYEKALSLFGQLEKAEVRNYGYLIETHLSFIGDSKNLTLAESFFDKIINDEMPYKIILQVSTVNSFLQNIWKAQNDFDHVYRIWEKAVKFYGNTVNPGILSSLNNTFFTIFFENYINDNINGFRKLQEIITFYSGVKKIDEPFFNVMLTRASIWHERSIIDFIDKNYTLYHIPRTIISYRILLKSLGSIDNTNNEEILDRWLELVKKLNELGQQYIANADLSALRDATVVWSQSKRDEKVFSASEDRIELYLKILKRYTPYFRATKQVYRYTTGCAESYPILNEYLSGYSDLSAEDIPVPQLH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Protein RMD9, mitochondrial
publication title The pentatricopeptide repeat protein Rmd9 recognizes the dodecameric element in the 3'-UTRs of yeast mitochondrial mRNAs
rcsb
source organism Saccharomyces cerevisiae s288c
total genus 198
structure length 510
sequence length 560
ec nomenclature
pdb deposition date 2020-09-02
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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