7ACRf

Structure of post-translocated trans-translation complex on e. coli stalled ribosome.
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
38
structure length
38
Chain Sequence
MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of tmRNA and SmpB as they transit through the ribosome.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
molecule tags Translation
source organism Escherichia coli
total genus 5
structure length 38
sequence length 38
ec nomenclature
pdb deposition date 2020-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
f PF00444 Ribosomal_L36 Ribosomal protein L36
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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